miRNA display CGI


Results 21 - 40 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 5' -62.5 NC_001798.1 + 79516 0.66 0.665849
Target:  5'- aGGCGUaUCuGCGcGCCGGCGgagacCCGGGGCc- -3'
miRNA:   3'- -CCGCG-AG-CGC-CGGUUGC-----GGCUCCGcc -5'
5216 5' -62.5 NC_001798.1 + 32029 0.66 0.665849
Target:  5'- gGGCGaC-CGCGGCCAcgggccgcuCGCCccGGCGu -3'
miRNA:   3'- -CCGC-GaGCGCCGGUu--------GCGGcuCCGCc -5'
5216 5' -62.5 NC_001798.1 + 56154 0.66 0.665849
Target:  5'- aGUGCg-GCGGCUuauAACGCCcggggGAcGGCGGg -3'
miRNA:   3'- cCGCGagCGCCGG---UUGCGG-----CU-CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 93348 0.66 0.665849
Target:  5'- cGGCcCUCcaccugaccgagGUGGaCGACGCCGGgccGGCGGa -3'
miRNA:   3'- -CCGcGAG------------CGCCgGUUGCGGCU---CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 97849 0.66 0.665849
Target:  5'- nGGCGCgggCaCGGUCAucgacaaccGCGCCGccccGGGCGu -3'
miRNA:   3'- -CCGCGa--GcGCCGGU---------UGCGGC----UCCGCc -5'
5216 5' -62.5 NC_001798.1 + 149162 0.66 0.665849
Target:  5'- aGGCGC-CuCGGCCgGugGuCCGgugggGGGCGGc -3'
miRNA:   3'- -CCGCGaGcGCCGG-UugC-GGC-----UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 93094 0.66 0.665849
Target:  5'- gGGCGCgCGCGacGCCGggaacaaggGC-CCGgcGGGCGGg -3'
miRNA:   3'- -CCGCGaGCGC--CGGU---------UGcGGC--UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 102388 0.66 0.665849
Target:  5'- uGGCGgUCgGCGGCgAugGCCcccaccAGcGCGGc -3'
miRNA:   3'- -CCGCgAG-CGCCGgUugCGGc-----UC-CGCC- -5'
5216 5' -62.5 NC_001798.1 + 142717 0.66 0.665849
Target:  5'- cGCGCggCGaCGGCac-CGCCG-GGCGa -3'
miRNA:   3'- cCGCGa-GC-GCCGguuGCGGCuCCGCc -5'
5216 5' -62.5 NC_001798.1 + 110899 0.66 0.664886
Target:  5'- cGGCGgUucgcgUGCGGCCAGCcgcccccGCCGGcccGCGGu -3'
miRNA:   3'- -CCGCgA-----GCGCCGGUUG-------CGGCUc--CGCC- -5'
5216 5' -62.5 NC_001798.1 + 97545 0.66 0.664886
Target:  5'- aGGCGUggCGCGGg-GACGCCcgcgagcGAGGaCGGg -3'
miRNA:   3'- -CCGCGa-GCGCCggUUGCGG-------CUCC-GCC- -5'
5216 5' -62.5 NC_001798.1 + 83590 0.66 0.663924
Target:  5'- uGCGgg-GCGGCCAucgggaccuugggucGCGCCguaagaaucgggccgGAGGCGGg -3'
miRNA:   3'- cCGCgagCGCCGGU---------------UGCGG---------------CUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 105632 0.66 0.660071
Target:  5'- cGGCGCUCcgggaagaauUGGCCGGCGcCCaacaccacguucuuuGAGGgGGg -3'
miRNA:   3'- -CCGCGAGc---------GCCGGUUGC-GG---------------CUCCgCC- -5'
5216 5' -62.5 NC_001798.1 + 79276 0.66 0.656216
Target:  5'- cGGCgGC-CGCGGaCCuGGCcCCGuGGGCGGu -3'
miRNA:   3'- -CCG-CGaGCGCC-GG-UUGcGGC-UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 27520 0.66 0.656216
Target:  5'- gGGCGCcCGCGGgaaggcagccCCGcgGCGCgCGGGG-GGa -3'
miRNA:   3'- -CCGCGaGCGCC----------GGU--UGCG-GCUCCgCC- -5'
5216 5' -62.5 NC_001798.1 + 24822 0.66 0.656216
Target:  5'- uGCGCggggaccugcgCGUGGCCGGCGgcagCGAGGCc- -3'
miRNA:   3'- cCGCGa----------GCGCCGGUUGCg---GCUCCGcc -5'
5216 5' -62.5 NC_001798.1 + 147022 0.66 0.656216
Target:  5'- gGGCGggcCGgGGCUuggcCGCCGAGGUGc -3'
miRNA:   3'- -CCGCga-GCgCCGGuu--GCGGCUCCGCc -5'
5216 5' -62.5 NC_001798.1 + 121378 0.66 0.656216
Target:  5'- cGGCGUUUGCcGCCuACGUgccGGCGGa -3'
miRNA:   3'- -CCGCGAGCGcCGGuUGCGgcuCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 120505 0.66 0.656216
Target:  5'- aGGCGCgCGUguuGGCCGugaACGCCG-GGUc- -3'
miRNA:   3'- -CCGCGaGCG---CCGGU---UGCGGCuCCGcc -5'
5216 5' -62.5 NC_001798.1 + 116130 0.66 0.656216
Target:  5'- gGGaC-CUgGUGGCCcACGUCGAGGCc- -3'
miRNA:   3'- -CC-GcGAgCGCCGGuUGCGGCUCCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.