miRNA display CGI


Results 21 - 40 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 5' -62.5 NC_001798.1 + 149982 0.78 0.145229
Target:  5'- gGGCGCggCGCccGCgGACGCCGGGGCGa -3'
miRNA:   3'- -CCGCGa-GCGc-CGgUUGCGGCUCCGCc -5'
5216 5' -62.5 NC_001798.1 + 153002 0.78 0.148791
Target:  5'- cGGCGCgggGCGGU---CGCCGGGGCGGa -3'
miRNA:   3'- -CCGCGag-CGCCGguuGCGGCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 115709 0.77 0.163456
Target:  5'- cGCGggCGUGGCCGACGUCGAgcuucccGGCGGc -3'
miRNA:   3'- cCGCgaGCGCCGGUUGCGGCU-------CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 96973 0.77 0.163849
Target:  5'- uGGCGCggacCGCGGCgGGCGgCGGGGCcaGGg -3'
miRNA:   3'- -CCGCGa---GCGCCGgUUGCgGCUCCG--CC- -5'
5216 5' -62.5 NC_001798.1 + 139345 0.77 0.167822
Target:  5'- cGCGCUgUGCGGCCAugGCgGcguccGGCGGg -3'
miRNA:   3'- cCGCGA-GCGCCGGUugCGgCu----CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 154053 0.77 0.171881
Target:  5'- gGGCGCggCaCGGCUggAGCGCCGGGGCGcGg -3'
miRNA:   3'- -CCGCGa-GcGCCGG--UUGCGGCUCCGC-C- -5'
5216 5' -62.5 NC_001798.1 + 48165 0.77 0.171881
Target:  5'- gGGCGcCUgGCGGCCAcgcACGCCcggcuGGCGGc -3'
miRNA:   3'- -CCGC-GAgCGCCGGU---UGCGGcu---CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 2508 0.76 0.176028
Target:  5'- gGGCGCg-GCGGCCGcggcggcgGCGUCGgcgGGGCGGg -3'
miRNA:   3'- -CCGCGagCGCCGGU--------UGCGGC---UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 26329 0.76 0.180263
Target:  5'- uGGCGCUgG-GGCgCGACGCCGugcgcGGCGGc -3'
miRNA:   3'- -CCGCGAgCgCCG-GUUGCGGCu----CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 1146 0.76 0.180263
Target:  5'- cGGCGg-CGUGGCCAGCcCCGcGGCGGu -3'
miRNA:   3'- -CCGCgaGCGCCGGUUGcGGCuCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 37152 0.76 0.180263
Target:  5'- uGGcCGCUCGC-GCC-GCGCCGccuGGCGGg -3'
miRNA:   3'- -CC-GCGAGCGcCGGuUGCGGCu--CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 98569 0.76 0.184152
Target:  5'- gGGCGCUgGUGGCCGcggugGCGUCGGcggccccGGCGGc -3'
miRNA:   3'- -CCGCGAgCGCCGGU-----UGCGGCU-------CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 70256 0.76 0.189005
Target:  5'- cGGCGUUucugucCGCGGCCAaacugcACGCCGccacGGCGGc -3'
miRNA:   3'- -CCGCGA------GCGCCGGU------UGCGGCu---CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 113629 0.76 0.189005
Target:  5'- -uCGCcugCGCGGCCGGCGCCGccauguGGGUGGc -3'
miRNA:   3'- ccGCGa--GCGCCGGUUGCGGC------UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 31347 0.76 0.193514
Target:  5'- gGGCGCgcgcaggCGCGGCgGgugggcgaagACGCCGcGGCGGc -3'
miRNA:   3'- -CCGCGa------GCGCCGgU----------UGCGGCuCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 25055 0.76 0.196727
Target:  5'- aGGCGCgcaagCGCaagagccccgccccGGCCAggGCGCCGccGGGCGGc -3'
miRNA:   3'- -CCGCGa----GCG--------------CCGGU--UGCGGC--UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 77214 0.76 0.198118
Target:  5'- cGGUGgaCGCGGCCGugcgggcgcaugGCGCCcuGGCGGa -3'
miRNA:   3'- -CCGCgaGCGCCGGU------------UGCGGcuCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 1747 0.75 0.207611
Target:  5'- cGCGC-CGcCGGCCAGCGCaCGGcgcacugcacGGCGGg -3'
miRNA:   3'- cCGCGaGC-GCCGGUUGCG-GCU----------CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 18299 0.75 0.207611
Target:  5'- aGGUGCUCGCcgggaaGGCCGGgGCCGuguuugucuccGGCGGg -3'
miRNA:   3'- -CCGCGAGCG------CCGGUUgCGGCu----------CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 102550 0.75 0.207611
Target:  5'- aGGcCGCaCGCGGUCAGCGgCGGguGGCGGg -3'
miRNA:   3'- -CC-GCGaGCGCCGGUUGCgGCU--CCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.