miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 5' -62.5 NC_001798.1 + 77855 1.11 0.000682
Target:  5'- aGGCGCUCGCGGCCAACGCCGAGGCGGu -3'
miRNA:   3'- -CCGCGAGCGCCGGUUGCGGCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 1218 0.84 0.051914
Target:  5'- cGCGCggccCGCGGCCGACGCCcagcguaucugcgGGGGCGGg -3'
miRNA:   3'- cCGCGa---GCGCCGGUUGCGG-------------CUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 154094 0.84 0.059132
Target:  5'- aGCGCcggggCGCGGCCGGCGCCGGggaccccggcGGCGGg -3'
miRNA:   3'- cCGCGa----GCGCCGGUUGCGGCU----------CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 28669 0.82 0.080145
Target:  5'- cGGCGC-CGCGuGgCGGCgGCCGAGGCGGu -3'
miRNA:   3'- -CCGCGaGCGC-CgGUUG-CGGCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 2656 0.81 0.084281
Target:  5'- uGCGCUUGCGcGCCucccgcGGCGCgGAGGCGGg -3'
miRNA:   3'- cCGCGAGCGC-CGG------UUGCGgCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 148403 0.81 0.09317
Target:  5'- aGGUGUgcgggCGgGGUgGGCGCCGGGGCGGg -3'
miRNA:   3'- -CCGCGa----GCgCCGgUUGCGGCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 3282 0.81 0.094106
Target:  5'- cGCGCUCGuCGGCCGgcgACGCCGccgccgacggcaacgGGGCGGc -3'
miRNA:   3'- cCGCGAGC-GCCGGU---UGCGGC---------------UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 153044 0.8 0.097697
Target:  5'- cGGCGCgCGguUGGCCGGCGCCGcccccugGGGCGGg -3'
miRNA:   3'- -CCGCGaGC--GCCGGUUGCGGC-------UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 20342 0.8 0.102942
Target:  5'- uGGCGCagGCGGUUGGCGCUGccGGGCGGg -3'
miRNA:   3'- -CCGCGagCGCCGGUUGCGGC--UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 47041 0.8 0.106585
Target:  5'- aGGCGCaCGCGGCguuaucggggacgcgCAAUGCCGGGGCGa -3'
miRNA:   3'- -CCGCGaGCGCCG---------------GUUGCGGCUCCGCc -5'
5216 5' -62.5 NC_001798.1 + 3168 0.8 0.110076
Target:  5'- cGGCGCcgucgucgucgucgUCGUcgucggccccGGCCGGCGCgGAGGCGGg -3'
miRNA:   3'- -CCGCG--------------AGCG----------CCGGUUGCGgCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 138754 0.8 0.110897
Target:  5'- cGGCGaC-CGUGGCCAGCuGCCGGGGCa- -3'
miRNA:   3'- -CCGC-GaGCGCCGGUUG-CGGCUCCGcc -5'
5216 5' -62.5 NC_001798.1 + 24550 0.79 0.119131
Target:  5'- cGGCGC-CggcggugguggcgGCGGCCGgcGCGCgGAGGCGGg -3'
miRNA:   3'- -CCGCGaG-------------CGCCGGU--UGCGgCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 90412 0.79 0.119425
Target:  5'- cGGCGCguuccCGCGGCCGG-GCuUGAGGCGGu -3'
miRNA:   3'- -CCGCGa----GCGCCGGUUgCG-GCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 77715 0.79 0.1224
Target:  5'- aGCGCUgGgCcGCCGGCGUCGAGGCGGc -3'
miRNA:   3'- cCGCGAgC-GcCGGUUGCGGCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 58413 0.79 0.128559
Target:  5'- cGGCGCagGCGGCCAGCGC-GAGcGCGc -3'
miRNA:   3'- -CCGCGagCGCCGGUUGCGgCUC-CGCc -5'
5216 5' -62.5 NC_001798.1 + 53629 0.78 0.131745
Target:  5'- gGGcCGC-CGCGGCCAaguACGCCGccgcgguGGCGGg -3'
miRNA:   3'- -CC-GCGaGCGCCGGU---UGCGGCu------CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 4060 0.78 0.135004
Target:  5'- cGGCGCUccaggcggccCGCGGUCGccgcggggguccGgGCCGGGGCGGg -3'
miRNA:   3'- -CCGCGA----------GCGCCGGU------------UgCGGCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 130502 0.78 0.138336
Target:  5'- aGUGCUCGCaGGCCAggccgacgAUGCCGGuGGCGGc -3'
miRNA:   3'- cCGCGAGCG-CCGGU--------UGCGGCU-CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 39555 0.78 0.1414
Target:  5'- uGGCGC-CGgGGCCGuccguccGCGCCGAcGCGGg -3'
miRNA:   3'- -CCGCGaGCgCCGGU-------UGCGGCUcCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.