miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 5' -62.5 NC_001798.1 + 60 0.73 0.304897
Target:  5'- gGGCGCgaagGCGGgCGGCGgCGgcGGGCGGg -3'
miRNA:   3'- -CCGCGag--CGCCgGUUGCgGC--UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 975 0.7 0.442089
Target:  5'- -aCGCgCGCGGCCAuCGCCGcgucuucuuaaAGGCGc -3'
miRNA:   3'- ccGCGaGCGCCGGUuGCGGC-----------UCCGCc -5'
5216 5' -62.5 NC_001798.1 + 1146 0.76 0.180263
Target:  5'- cGGCGg-CGUGGCCAGCcCCGcGGCGGu -3'
miRNA:   3'- -CCGCgaGCGCCGGUUGcGGCuCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 1218 0.84 0.051914
Target:  5'- cGCGCggccCGCGGCCGACGCCcagcguaucugcgGGGGCGGg -3'
miRNA:   3'- cCGCGa---GCGCCGGUUGCGG-------------CUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 1485 0.75 0.212504
Target:  5'- gGGCGCcauggCGUcGCCcGCGcCCGAGGCGGc -3'
miRNA:   3'- -CCGCGa----GCGcCGGuUGC-GGCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 1636 0.69 0.477018
Target:  5'- aGGCGCa-GCGGCgGcGCGUCGGGGUa- -3'
miRNA:   3'- -CCGCGagCGCCGgU-UGCGGCUCCGcc -5'
5216 5' -62.5 NC_001798.1 + 1663 0.67 0.579105
Target:  5'- aGGCGCgcgugCGCGGCCuccacGCGCgCGAagacccccGGCc- -3'
miRNA:   3'- -CCGCGa----GCGCCGGu----UGCG-GCU--------CCGcc -5'
5216 5' -62.5 NC_001798.1 + 1747 0.75 0.207611
Target:  5'- cGCGC-CGcCGGCCAGCGCaCGGcgcacugcacGGCGGg -3'
miRNA:   3'- cCGCGaGC-GCCGGUUGCG-GCU----------CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 1850 0.68 0.560045
Target:  5'- cGGCGCgCaCGGCguugaCGACGauGAGGCGGc -3'
miRNA:   3'- -CCGCGaGcGCCG-----GUUGCggCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 1960 0.67 0.617584
Target:  5'- -aCGCccugCGCGcCCAGCGCCGAGacgucgggggcGCGGu -3'
miRNA:   3'- ccGCGa---GCGCcGGUUGCGGCUC-----------CGCC- -5'
5216 5' -62.5 NC_001798.1 + 2077 0.71 0.369153
Target:  5'- cGCGCUCgGCGGaCC-ACuCCGGGGgGGg -3'
miRNA:   3'- cCGCGAG-CGCC-GGuUGcGGCUCCgCC- -5'
5216 5' -62.5 NC_001798.1 + 2113 0.71 0.361573
Target:  5'- cGGCGCggccCGCGGCCAGguccuCGCCcGGcaGCGGc -3'
miRNA:   3'- -CCGCGa---GCGCCGGUU-----GCGGcUC--CGCC- -5'
5216 5' -62.5 NC_001798.1 + 2203 0.75 0.222587
Target:  5'- aGGcCGCcgCGCGGCgCAGCGggcCCGAGGCGc -3'
miRNA:   3'- -CC-GCGa-GCGCCG-GUUGC---GGCUCCGCc -5'
5216 5' -62.5 NC_001798.1 + 2233 0.68 0.522498
Target:  5'- nGCGCa-GCgGGCCGaaggcggcgggcGCGCCGccgggGGGCGGg -3'
miRNA:   3'- cCGCGagCG-CCGGU------------UGCGGC-----UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 2278 0.73 0.291838
Target:  5'- cGGCGCagcgCGCGGCCAGCGaggccagCGcGcGCGGg -3'
miRNA:   3'- -CCGCGa---GCGCCGGUUGCg------GCuC-CGCC- -5'
5216 5' -62.5 NC_001798.1 + 2395 0.66 0.645601
Target:  5'- aGGC-CUCcagggcgGCGGCCGaggGCGCCGGcguguGGCuGGg -3'
miRNA:   3'- -CCGcGAG-------CGCCGGU---UGCGGCU-----CCG-CC- -5'
5216 5' -62.5 NC_001798.1 + 2451 0.67 0.582934
Target:  5'- cGGCGCcagccgcccugcgggUCGgGGCCcuCGgCGGgccGGCGGg -3'
miRNA:   3'- -CCGCG---------------AGCgCCGGuuGCgGCU---CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 2508 0.76 0.176028
Target:  5'- gGGCGCg-GCGGCCGcggcggcgGCGUCGgcgGGGCGGg -3'
miRNA:   3'- -CCGCGagCGCCGGU--------UGCGGC---UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 2543 0.67 0.617584
Target:  5'- nGGgGg-CGCGGCCccCGCgggaGGGGCGGc -3'
miRNA:   3'- -CCgCgaGCGCCGGuuGCGg---CUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 2610 0.73 0.273075
Target:  5'- gGGCGCggggCGCcGcCCGGCggcgcccugGCCGGGGCGGg -3'
miRNA:   3'- -CCGCGa---GCGcC-GGUUG---------CGGCUCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.