miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 5' -62.5 NC_001798.1 + 154398 0.73 0.304897
Target:  5'- gGGCGCgaagGCGGgCGGCGgCGgcGGGCGGg -3'
miRNA:   3'- -CCGCGag--CGCCgGUUGCgGC--UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 154170 0.72 0.318401
Target:  5'- cGGCGUagGCccggaGCCGgagcGCGUCGGGGCGGg -3'
miRNA:   3'- -CCGCGagCGc----CGGU----UGCGGCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 154094 0.84 0.059132
Target:  5'- aGCGCcggggCGCGGCCGGCGCCGGggaccccggcGGCGGg -3'
miRNA:   3'- cCGCGa----GCGCCGGUUGCGGCU----------CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 154053 0.77 0.171881
Target:  5'- gGGCGCggCaCGGCUggAGCGCCGGGGCGcGg -3'
miRNA:   3'- -CCGCGa-GcGCCGG--UUGCGGCUCCGC-C- -5'
5216 5' -62.5 NC_001798.1 + 153939 0.67 0.627243
Target:  5'- uGGgGCaccaGCaGCCAGCGCCGcAGGagcgaGGa -3'
miRNA:   3'- -CCgCGag--CGcCGGUUGCGGC-UCCg----CC- -5'
5216 5' -62.5 NC_001798.1 + 153774 0.74 0.238471
Target:  5'- gGGCGCU-GCGGCCcGCGCuccuugcgcggCGGcGGCGGg -3'
miRNA:   3'- -CCGCGAgCGCCGGuUGCG-----------GCU-CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 153717 0.7 0.441234
Target:  5'- aGGCGCgccagguacuccgUCGUGGUgcgcagccgUAGCGCCagguGGGGCGGa -3'
miRNA:   3'- -CCGCG-------------AGCGCCG---------GUUGCGG----CUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 153669 0.7 0.425175
Target:  5'- cGGCGCgucCGCGGgCGgggACGCgGGGGCc- -3'
miRNA:   3'- -CCGCGa--GCGCCgGU---UGCGgCUCCGcc -5'
5216 5' -62.5 NC_001798.1 + 153078 0.68 0.550579
Target:  5'- nGGCGga-GCGGCggggCGGCGCCGGGcccucGCGGa -3'
miRNA:   3'- -CCGCgagCGCCG----GUUGCGGCUC-----CGCC- -5'
5216 5' -62.5 NC_001798.1 + 153044 0.8 0.097697
Target:  5'- cGGCGCgCGguUGGCCGGCGCCGcccccugGGGCGGg -3'
miRNA:   3'- -CCGCGaGC--GCCGGUUGCGGC-------UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 153002 0.78 0.148791
Target:  5'- cGGCGCgggGCGGU---CGCCGGGGCGGa -3'
miRNA:   3'- -CCGCGag-CGCCGguuGCGGCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 152239 0.67 0.595414
Target:  5'- cGGcCGCUCGgGGCCGggguccgcccgggaGCucguGCCGGGcCGGg -3'
miRNA:   3'- -CC-GCGAGCgCCGGU--------------UG----CGGCUCcGCC- -5'
5216 5' -62.5 NC_001798.1 + 151603 0.71 0.369153
Target:  5'- uGGCGCUCGgccgggGGCCGG-GCCGgGGGCGu -3'
miRNA:   3'- -CCGCGAGCg-----CCGGUUgCGGC-UCCGCc -5'
5216 5' -62.5 NC_001798.1 + 150886 0.66 0.675457
Target:  5'- gGGuCGCcccCGCaccGCCGcccccGCGCCGGGGCGc -3'
miRNA:   3'- -CC-GCGa--GCGc--CGGU-----UGCGGCUCCGCc -5'
5216 5' -62.5 NC_001798.1 + 150569 0.68 0.531801
Target:  5'- cGGgGCcCGCgGGgCGGCGCgGAgacGGCGGg -3'
miRNA:   3'- -CCgCGaGCG-CCgGUUGCGgCU---CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 150452 0.72 0.33949
Target:  5'- cGCGCggggCGaCGGCC-GCGCgGGGGCGc -3'
miRNA:   3'- cCGCGa---GC-GCCGGuUGCGgCUCCGCc -5'
5216 5' -62.5 NC_001798.1 + 150402 0.72 0.349672
Target:  5'- cGCGCUCgcagacaccacggggGCGGCggCGGCG-CGGGGCGGa -3'
miRNA:   3'- cCGCGAG---------------CGCCG--GUUGCgGCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 150101 0.71 0.361573
Target:  5'- aGCGCgggGCGGCgGAgGaaGAGGCGGa -3'
miRNA:   3'- cCGCGag-CGCCGgUUgCggCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 149982 0.78 0.145229
Target:  5'- gGGCGCggCGCccGCgGACGCCGGGGCGa -3'
miRNA:   3'- -CCGCGa-GCGc-CGgUUGCGGCUCCGCc -5'
5216 5' -62.5 NC_001798.1 + 149945 0.67 0.627243
Target:  5'- cGGCGaC-CGCGGCCugggacgacggaGACGCCGA--CGGn -3'
miRNA:   3'- -CCGC-GaGCGCCGG------------UUGCGGCUccGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.