miRNA display CGI


Results 21 - 40 of 386 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 5' -62.5 NC_001798.1 + 2656 0.81 0.084281
Target:  5'- uGCGCUUGCGcGCCucccgcGGCGCgGAGGCGGg -3'
miRNA:   3'- cCGCGAGCGC-CGG------UUGCGgCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 2793 0.72 0.318401
Target:  5'- aGGCGCgggcucCGCGG-CAGCGCCG-GGCccaGGg -3'
miRNA:   3'- -CCGCGa-----GCGCCgGUUGCGGCuCCG---CC- -5'
5216 5' -62.5 NC_001798.1 + 2966 0.74 0.24958
Target:  5'- gGGCGCgu-CGGCguGCGgCGGGGCGGc -3'
miRNA:   3'- -CCGCGagcGCCGguUGCgGCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 3008 0.66 0.675457
Target:  5'- gGGCGCgggggCGCGGCgG--GCCG-GGCu- -3'
miRNA:   3'- -CCGCGa----GCGCCGgUugCGGCuCCGcc -5'
5216 5' -62.5 NC_001798.1 + 3168 0.8 0.110076
Target:  5'- cGGCGCcgucgucgucgucgUCGUcgucggccccGGCCGGCGCgGAGGCGGg -3'
miRNA:   3'- -CCGCG--------------AGCG----------CCGGUUGCGgCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 3222 0.74 0.238471
Target:  5'- cGGCGCUCaggcgccccaggGCGGCgagcacccccgCGGCGCCGuagccGGCGGg -3'
miRNA:   3'- -CCGCGAG------------CGCCG-----------GUUGCGGCu----CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 3282 0.81 0.094106
Target:  5'- cGCGCUCGuCGGCCGgcgACGCCGccgccgacggcaacgGGGCGGc -3'
miRNA:   3'- cCGCGAGC-GCCGGU---UGCGGC---------------UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 3333 0.67 0.588688
Target:  5'- cGGCggGCUuccCGCGGgCGucguCGCCGucguGGCGGu -3'
miRNA:   3'- -CCG--CGA---GCGCCgGUu---GCGGCu---CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 3481 0.66 0.646566
Target:  5'- cGCGCggucguagCgGCGGCuCAugGCCacGGCGGc -3'
miRNA:   3'- cCGCGa-------G-CGCCG-GUugCGGcuCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 3767 0.7 0.433584
Target:  5'- --aGCUCGgGcGCCcacacgGGCGCCGGGGCGc -3'
miRNA:   3'- ccgCGAGCgC-CGG------UUGCGGCUCCGCc -5'
5216 5' -62.5 NC_001798.1 + 3829 0.68 0.522498
Target:  5'- cGC-CUCGgGcGCCccccaGAgGCCGGGGCGGc -3'
miRNA:   3'- cCGcGAGCgC-CGG-----UUgCGGCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 4025 0.74 0.255293
Target:  5'- uGGCG-UCGCGGCCGGCcaccGCCGc-GCGGg -3'
miRNA:   3'- -CCGCgAGCGCCGGUUG----CGGCucCGCC- -5'
5216 5' -62.5 NC_001798.1 + 4060 0.78 0.135004
Target:  5'- cGGCGCUccaggcggccCGCGGUCGccgcggggguccGgGCCGGGGCGGg -3'
miRNA:   3'- -CCGCGA----------GCGCCGGU------------UgCGGCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 4214 0.68 0.531801
Target:  5'- cGGCGCUgGCGGg-GGCGC--GGGCGGc -3'
miRNA:   3'- -CCGCGAgCGCCggUUGCGgcUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 4370 0.69 0.494988
Target:  5'- gGGCGCgccgGCGGCgGugGUgGuGGUGGu -3'
miRNA:   3'- -CCGCGag--CGCCGgUugCGgCuCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 4721 0.72 0.325319
Target:  5'- cGGCagGCUCGUcgacGGCCuccccgGACGCCGGGGCc- -3'
miRNA:   3'- -CCG--CGAGCG----CCGG------UUGCGGCUCCGcc -5'
5216 5' -62.5 NC_001798.1 + 5886 0.68 0.550579
Target:  5'- cGCGUcauccCGCGGgCucCGCCccGAGGCGGg -3'
miRNA:   3'- cCGCGa----GCGCCgGuuGCGG--CUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 6022 0.67 0.597338
Target:  5'- cGGCGgcaUCGCgaagggGGCCAcagcgagacagagACGCCGGcGGCGa -3'
miRNA:   3'- -CCGCg--AGCG------CCGGU-------------UGCGGCU-CCGCc -5'
5216 5' -62.5 NC_001798.1 + 6661 0.67 0.607934
Target:  5'- cGCGCuuucUCGCaGGCCgGGCGCCGccuucguGGaCGGg -3'
miRNA:   3'- cCGCG----AGCG-CCGG-UUGCGGCu------CC-GCC- -5'
5216 5' -62.5 NC_001798.1 + 7161 0.68 0.550579
Target:  5'- gGGCaCUCGCuuccgaccgacgGGCCcccGCaCCGGGGCGGc -3'
miRNA:   3'- -CCGcGAGCG------------CCGGu--UGcGGCUCCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.