miRNA display CGI


Results 1 - 20 of 615 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5219 3' -64.2 NC_001798.1 + 75807 1.12 0.000403
Target:  5'- cCCCGCCACCCCGACGCACCCGGAGCCg -3'
miRNA:   3'- -GGGCGGUGGGGCUGCGUGGGCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 121427 0.93 0.009909
Target:  5'- cCCCGUCAUCCCGGCGCACCCGGAccuccuGCCg -3'
miRNA:   3'- -GGGCGGUGGGGCUGCGUGGGCCU------CGG- -5'
5219 3' -64.2 NC_001798.1 + 24697 0.88 0.023114
Target:  5'- gCCCGCCGCgCCCc-CGCGCCCGGGGCCc -3'
miRNA:   3'- -GGGCGGUG-GGGcuGCGUGGGCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 73330 0.86 0.029836
Target:  5'- gCCCGCgCGCCgUCGACGCGCCCGGcgGGCCg -3'
miRNA:   3'- -GGGCG-GUGG-GGCUGCGUGGGCC--UCGG- -5'
5219 3' -64.2 NC_001798.1 + 75351 0.86 0.029836
Target:  5'- gUCGCCguaCCCGGCGCACCCGGGGCUg -3'
miRNA:   3'- gGGCGGug-GGGCUGCGUGGGCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 98902 0.85 0.038473
Target:  5'- gCCgCGCCGCugCCCGACGCGCCCGGAGg- -3'
miRNA:   3'- -GG-GCGGUG--GGGCUGCGUGGGCCUCgg -5'
5219 3' -64.2 NC_001798.1 + 58330 0.84 0.041512
Target:  5'- gCCCGCCGCCgCGugGCccccgacaaacACCUGGGGCCa -3'
miRNA:   3'- -GGGCGGUGGgGCugCG-----------UGGGCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 115331 0.84 0.044786
Target:  5'- gCCCGC--CCCCGGC-CACCCGGAGCCc -3'
miRNA:   3'- -GGGCGguGGGGCUGcGUGGGCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 25448 0.82 0.065312
Target:  5'- cCCCGCC-CCCCGgcgGCGCGCCCGccGCCu -3'
miRNA:   3'- -GGGCGGuGGGGC---UGCGUGGGCcuCGG- -5'
5219 3' -64.2 NC_001798.1 + 31596 0.82 0.065312
Target:  5'- gCCGUCGCCCCG-CGCGUCCGGAGUCc -3'
miRNA:   3'- gGGCGGUGGGGCuGCGUGGGCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 93764 0.81 0.068658
Target:  5'- gCCCGCCACCCCaaguucgcgaGCGcCGCCCGGggGGCCa -3'
miRNA:   3'- -GGGCGGUGGGGc---------UGC-GUGGGCC--UCGG- -5'
5219 3' -64.2 NC_001798.1 + 52767 0.8 0.077761
Target:  5'- cCCCGCguCCUCGGCGC-CCCGGGcGCCc -3'
miRNA:   3'- -GGGCGguGGGGCUGCGuGGGCCU-CGG- -5'
5219 3' -64.2 NC_001798.1 + 127860 0.8 0.077761
Target:  5'- cCCCGCCccACCCCGccccACGuCACCgGGGGCCc -3'
miRNA:   3'- -GGGCGG--UGGGGC----UGC-GUGGgCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 128831 0.8 0.077761
Target:  5'- cCCCGCgGaCCCCGGCGCcCCCGcGGCCu -3'
miRNA:   3'- -GGGCGgU-GGGGCUGCGuGGGCcUCGG- -5'
5219 3' -64.2 NC_001798.1 + 75989 0.8 0.081717
Target:  5'- gCCCGCCGCCCCGG-GCGCCggCGGcagGGCCc -3'
miRNA:   3'- -GGGCGGUGGGGCUgCGUGG--GCC---UCGG- -5'
5219 3' -64.2 NC_001798.1 + 31472 0.8 0.081717
Target:  5'- uCCgCGCCGCCCCG-CGgGCCCcGGGCCg -3'
miRNA:   3'- -GG-GCGGUGGGGCuGCgUGGGcCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 59223 0.8 0.081717
Target:  5'- gCCCGCgACCCCGgggcuguccccGCgacacaucccGCACCCGGGGCCc -3'
miRNA:   3'- -GGGCGgUGGGGC-----------UG----------CGUGGGCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 123439 0.8 0.083766
Target:  5'- -gCGCCccCCCCGACGCgcgcgcccccgACCCGGGGCCc -3'
miRNA:   3'- ggGCGGu-GGGGCUGCG-----------UGGGCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 87736 0.8 0.085864
Target:  5'- cCCCGCCGgCCCGAacccCGCgGCCCuGAGCCg -3'
miRNA:   3'- -GGGCGGUgGGGCU----GCG-UGGGcCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 27855 0.8 0.088012
Target:  5'- uCUC-CCGCCCCGACGCGCuCCGGcuccgGGCCu -3'
miRNA:   3'- -GGGcGGUGGGGCUGCGUG-GGCC-----UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.