miRNA display CGI


Results 1 - 20 of 615 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5219 3' -64.2 NC_001798.1 + 103 0.75 0.194541
Target:  5'- cCCCGCgCGCCCCcuucccCGUcccuccCCCGGAGCCg -3'
miRNA:   3'- -GGGCG-GUGGGGcu----GCGu-----GGGCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 158 0.78 0.109775
Target:  5'- gCCGCCccuccCCCCG-CGCGCCgCGGGGCUg -3'
miRNA:   3'- gGGCGGu----GGGGCuGCGUGG-GCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 293 0.68 0.482125
Target:  5'- cCCCGCCcCCCCGAagacgccaguCGCACCaccgcucGCCc -3'
miRNA:   3'- -GGGCGGuGGGGCU----------GCGUGGgccu---CGG- -5'
5219 3' -64.2 NC_001798.1 + 428 0.76 0.150209
Target:  5'- cCCCuCCcCCCCG-CGCGCCaCGGGGCUg -3'
miRNA:   3'- -GGGcGGuGGGGCuGCGUGG-GCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 481 0.71 0.304375
Target:  5'- gCCGCCuCCCCcGCGCcccgcCCCGGGGgCu -3'
miRNA:   3'- gGGCGGuGGGGcUGCGu----GGGCCUCgG- -5'
5219 3' -64.2 NC_001798.1 + 514 0.76 0.150209
Target:  5'- cCCCGCCccuCCCCc-CGCGCCCGcGGCCc -3'
miRNA:   3'- -GGGCGGu--GGGGcuGCGUGGGCcUCGG- -5'
5219 3' -64.2 NC_001798.1 + 679 0.67 0.554838
Target:  5'- gCCCGCCcgACCCCcGCcCGCCCGacccccGCCc -3'
miRNA:   3'- -GGGCGG--UGGGGcUGcGUGGGCcu----CGG- -5'
5219 3' -64.2 NC_001798.1 + 724 0.67 0.554838
Target:  5'- gCCCGCCcgACCCCcGCcCGCCCGacccccGCCc -3'
miRNA:   3'- -GGGCGG--UGGGGcUGcGUGGGCcu----CGG- -5'
5219 3' -64.2 NC_001798.1 + 769 0.67 0.554838
Target:  5'- gCCCGCCcgACCCCcGCcCGCCCGacccccGCCc -3'
miRNA:   3'- -GGGCGG--UGGGGcUGcGUGGGCcu----CGG- -5'
5219 3' -64.2 NC_001798.1 + 814 0.67 0.554838
Target:  5'- gCCCGCCcgACCCCcGCcCGCCCGacccccGCCc -3'
miRNA:   3'- -GGGCGG--UGGGGcUGcGUGGGCcu----CGG- -5'
5219 3' -64.2 NC_001798.1 + 859 0.67 0.554838
Target:  5'- gCCCGCCcgACCCCcGCcCGCCCGacccccGCCc -3'
miRNA:   3'- -GGGCGG--UGGGGcUGcGUGGGCcu----CGG- -5'
5219 3' -64.2 NC_001798.1 + 1194 0.75 0.189638
Target:  5'- gCCCGCCGcggccagcaccguCCCCG-CGCgGCCCGcGGCCg -3'
miRNA:   3'- -GGGCGGU-------------GGGGCuGCG-UGGGCcUCGG- -5'
5219 3' -64.2 NC_001798.1 + 1336 0.73 0.255539
Target:  5'- uCCCGCCGCggCCCG-CGCAgcUCCGccGGGCCg -3'
miRNA:   3'- -GGGCGGUG--GGGCuGCGU--GGGC--CUCGG- -5'
5219 3' -64.2 NC_001798.1 + 1405 0.66 0.620909
Target:  5'- --gGCCGCagCGGCGCGCCCaG-GCCc -3'
miRNA:   3'- gggCGGUGggGCUGCGUGGGcCuCGG- -5'
5219 3' -64.2 NC_001798.1 + 1463 0.72 0.285264
Target:  5'- cCUCGCagaAgUCCGGCGCGCCgGGcGCCa -3'
miRNA:   3'- -GGGCGg--UgGGGCUGCGUGGgCCuCGG- -5'
5219 3' -64.2 NC_001798.1 + 1500 0.68 0.490979
Target:  5'- gCCCGCgcccgaggcggCGgCCCGGCcguccaGCGCCgGGAGCa -3'
miRNA:   3'- -GGGCG-----------GUgGGGCUG------CGUGGgCCUCGg -5'
5219 3' -64.2 NC_001798.1 + 1696 0.72 0.267113
Target:  5'- aCCC-CCGgCCCGAacaCGCGgCCGGAGgCCa -3'
miRNA:   3'- -GGGcGGUgGGGCU---GCGUgGGCCUC-GG- -5'
5219 3' -64.2 NC_001798.1 + 1939 0.68 0.497222
Target:  5'- uCCCGCguggacagcagcagCACgCCCuGCGCGCCCaGcGCCg -3'
miRNA:   3'- -GGGCG--------------GUG-GGGcUGCGUGGGcCuCGG- -5'
5219 3' -64.2 NC_001798.1 + 2006 0.75 0.173119
Target:  5'- gCCCGCCcaggcgGCCgUGGCGgGCCCGcaGAGCCg -3'
miRNA:   3'- -GGGCGG------UGGgGCUGCgUGGGC--CUCGG- -5'
5219 3' -64.2 NC_001798.1 + 2071 0.72 0.291527
Target:  5'- gCCCGCCGCgCUCGGCGgacCACuCCGGGGg- -3'
miRNA:   3'- -GGGCGGUG-GGGCUGC---GUG-GGCCUCgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.