miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5219 5' -57.7 NC_001798.1 + 75842 0.96 0.015828
Target:  5'- aUCGGAU-CAGGCGCUGGCCCAGUUUGc -3'
miRNA:   3'- -AGCCUAgGUCCGCGACCGGGUCAAAC- -5'
5219 5' -57.7 NC_001798.1 + 96960 0.75 0.326107
Target:  5'- cUGGA-CCAGGCGCUGGCgCGGa--- -3'
miRNA:   3'- aGCCUaGGUCCGCGACCGgGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 75884 0.73 0.44084
Target:  5'- gCGGGUCgAGGCGgaGGCCCGc---- -3'
miRNA:   3'- aGCCUAGgUCCGCgaCCGGGUcaaac -5'
5219 5' -57.7 NC_001798.1 + 51696 0.73 0.449882
Target:  5'- -aGGG-CgAGGCGCUGGCCUGGUa-- -3'
miRNA:   3'- agCCUaGgUCCGCGACCGGGUCAaac -5'
5219 5' -57.7 NC_001798.1 + 23895 0.72 0.477602
Target:  5'- gCGGAgg-AGGCGCgGGCCCGGUUc- -3'
miRNA:   3'- aGCCUaggUCCGCGaCCGGGUCAAac -5'
5219 5' -57.7 NC_001798.1 + 111820 0.72 0.477602
Target:  5'- gCGGGcgUCCAGGgGCUGGCgCGGg--- -3'
miRNA:   3'- aGCCU--AGGUCCgCGACCGgGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 69112 0.72 0.506139
Target:  5'- gCGGAggccUCCAGGaGCUGGCcCCAGg--- -3'
miRNA:   3'- aGCCU----AGGUCCgCGACCG-GGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 46530 0.7 0.625887
Target:  5'- -aGGGUCgGGGgGgUGGCCCGGa--- -3'
miRNA:   3'- agCCUAGgUCCgCgACCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 104899 0.69 0.646233
Target:  5'- gCGGAaUaguGGCGCUGGCCCAcGUa-- -3'
miRNA:   3'- aGCCUaGgu-CCGCGACCGGGU-CAaac -5'
5219 5' -57.7 NC_001798.1 + 129048 0.69 0.676648
Target:  5'- cCGGAU-CGGGCGCUGGUggAGUUa- -3'
miRNA:   3'- aGCCUAgGUCCGCGACCGggUCAAac -5'
5219 5' -57.7 NC_001798.1 + 3637 0.69 0.676648
Target:  5'- cCGGAagCAGGC-CUGGUCCAGc--- -3'
miRNA:   3'- aGCCUagGUCCGcGACCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 103489 0.68 0.696759
Target:  5'- cUGGGUCCAGGgccaGCUcGCCCGGg--- -3'
miRNA:   3'- aGCCUAGGUCCg---CGAcCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 37218 0.68 0.696759
Target:  5'- gCGGcgCCGGaGCuuUGGCCCAGgggggUUGu -3'
miRNA:   3'- aGCCuaGGUC-CGcgACCGGGUCa----AAC- -5'
5219 5' -57.7 NC_001798.1 + 64519 0.68 0.716656
Target:  5'- -gGGGUCCAGGCaagGCagGGCCUGGg--- -3'
miRNA:   3'- agCCUAGGUCCG---CGa-CCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 84752 0.68 0.726502
Target:  5'- gCGGGgccgUCGGGCGCUuuuauaGGCCCGGc--- -3'
miRNA:   3'- aGCCUa---GGUCCGCGA------CCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 121917 0.68 0.736267
Target:  5'- -aGGAgaUCCucGCGCUGGUCCAGc--- -3'
miRNA:   3'- agCCU--AGGucCGCGACCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 107873 0.68 0.736267
Target:  5'- uUCGGggCCAGG-GCUGGCaCCGu---- -3'
miRNA:   3'- -AGCCuaGGUCCgCGACCG-GGUcaaac -5'
5219 5' -57.7 NC_001798.1 + 70939 0.68 0.74498
Target:  5'- aUCGGggCgCGGuggucccgccgccGCuGCUGGCCCAGUUUc -3'
miRNA:   3'- -AGCCuaG-GUC-------------CG-CGACCGGGUCAAAc -5'
5219 5' -57.7 NC_001798.1 + 24626 0.68 0.745943
Target:  5'- -gGGAUCCuggAGGCGCUGGCggAGg--- -3'
miRNA:   3'- agCCUAGG---UCCGCGACCGggUCaaac -5'
5219 5' -57.7 NC_001798.1 + 116127 0.68 0.749786
Target:  5'- aUCGGGaccugguggcccacgUCgAGGCcCUGGCCCAGcuggUGg -3'
miRNA:   3'- -AGCCU---------------AGgUCCGcGACCGGGUCaa--AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.