miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5219 5' -57.7 NC_001798.1 + 2797 0.67 0.774343
Target:  5'- gCGGGcUCCGcGGCaGCgccgGGCCCAGg--- -3'
miRNA:   3'- aGCCU-AGGU-CCG-CGa---CCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 3637 0.69 0.676648
Target:  5'- cCGGAagCAGGC-CUGGUCCAGc--- -3'
miRNA:   3'- aGCCUagGUCCGcGACCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 4090 0.66 0.82752
Target:  5'- -gGGGUCCGGGCcgggGCgGGCUCGGc--- -3'
miRNA:   3'- agCCUAGGUCCG----CGaCCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 9983 0.66 0.851849
Target:  5'- gCGGAccgCCAGGCGgUacGCCCAGg--- -3'
miRNA:   3'- aGCCUa--GGUCCGCgAc-CGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 11749 0.66 0.843927
Target:  5'- -aGGGUcCCAGGCGCggGGCCgAa---- -3'
miRNA:   3'- agCCUA-GGUCCGCGa-CCGGgUcaaac -5'
5219 5' -57.7 NC_001798.1 + 17577 0.66 0.843927
Target:  5'- aCGGAgaCGGGCGCUuGCUCAGa--- -3'
miRNA:   3'- aGCCUagGUCCGCGAcCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 23895 0.72 0.477602
Target:  5'- gCGGAgg-AGGCGCgGGCCCGGUUc- -3'
miRNA:   3'- aGCCUaggUCCGCGaCCGGGUCAAac -5'
5219 5' -57.7 NC_001798.1 + 24626 0.68 0.745943
Target:  5'- -gGGAUCCuggAGGCGCUGGCggAGg--- -3'
miRNA:   3'- agCCUAGG---UCCGCGACCGggUCaaac -5'
5219 5' -57.7 NC_001798.1 + 31793 0.66 0.810411
Target:  5'- gUCGGGagggCCGGGCGCggagggaGGaCCCGGg--- -3'
miRNA:   3'- -AGCCUa---GGUCCGCGa------CC-GGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 34739 0.66 0.835815
Target:  5'- gUCGGGcCCGGGaGCggggcGGCCCGGg--- -3'
miRNA:   3'- -AGCCUaGGUCCgCGa----CCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 34785 0.67 0.801613
Target:  5'- gCGGAaacgCCGccGGCGC-GGCCCGGg--- -3'
miRNA:   3'- aGCCUa---GGU--CCGCGaCCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 35541 0.66 0.81905
Target:  5'- cCGGcgCgGGGCGUUgccGGCCCGGc--- -3'
miRNA:   3'- aGCCuaGgUCCGCGA---CCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 36326 0.66 0.843927
Target:  5'- cCGGggCCGGGgcuCGCUGGUCCGc---- -3'
miRNA:   3'- aGCCuaGGUCC---GCGACCGGGUcaaac -5'
5219 5' -57.7 NC_001798.1 + 37218 0.68 0.696759
Target:  5'- gCGGcgCCGGaGCuuUGGCCCAGgggggUUGu -3'
miRNA:   3'- aGCCuaGGUC-CGcgACCGGGUCa----AAC- -5'
5219 5' -57.7 NC_001798.1 + 46530 0.7 0.625887
Target:  5'- -aGGGUCgGGGgGgUGGCCCGGa--- -3'
miRNA:   3'- agCCUAGgUCCgCgACCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 51159 0.66 0.835815
Target:  5'- cCGGGUCCcgacGCGCguccgaGGCCCGGg--- -3'
miRNA:   3'- aGCCUAGGuc--CGCGa-----CCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 51696 0.73 0.449882
Target:  5'- -aGGG-CgAGGCGCUGGCCUGGUa-- -3'
miRNA:   3'- agCCUaGgUCCGCGACCGGGUCAaac -5'
5219 5' -57.7 NC_001798.1 + 52020 0.67 0.792663
Target:  5'- -gGGGUCCcuGCuguaCUGGCCCGGggUGc -3'
miRNA:   3'- agCCUAGGucCGc---GACCGGGUCaaAC- -5'
5219 5' -57.7 NC_001798.1 + 52884 0.66 0.835815
Target:  5'- gCGGGUCCGcGCGUggacaucaUGGCgCAGUUUc -3'
miRNA:   3'- aGCCUAGGUcCGCG--------ACCGgGUCAAAc -5'
5219 5' -57.7 NC_001798.1 + 57201 0.66 0.835815
Target:  5'- gCGGGUCCguucgguuggGGGCGCUGucauacaCCAGUUg- -3'
miRNA:   3'- aGCCUAGG----------UCCGCGACcg-----GGUCAAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.