miRNA display CGI


Results 21 - 40 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 2612 0.68 0.401166
Target:  5'- -gCgCGGGGCgCCGCCCggcggcgcccugGCCGGGGCg -3'
miRNA:   3'- ggGgGUUCCGgGGCGGG------------CGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 2819 0.68 0.425571
Target:  5'- -gCCCAGGGCCCCGgC-GaCCA-GGCUc -3'
miRNA:   3'- ggGGGUUCCGGGGCgGgC-GGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 2995 0.67 0.4339
Target:  5'- -gCCCGcGGGCCCCGggCGCgGGGGCg -3'
miRNA:   3'- ggGGGU-UCCGGGGCggGCGgUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 3117 0.68 0.409202
Target:  5'- aCUCCAcGGCCacgCgGCCCGCCuccgcgcgccGGCCg -3'
miRNA:   3'- gGGGGUuCCGG---GgCGGGCGGuu--------CCGG- -5'
5221 5' -65.2 NC_001798.1 + 3234 0.69 0.370047
Target:  5'- gCCCCAGGGCggcgagcaccCCCGCggCGCCGuaGCCg -3'
miRNA:   3'- gGGGGUUCCG----------GGGCGg-GCGGUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 3515 0.69 0.333532
Target:  5'- gCCgCCAcgugcgccAGGCCCCagccgaagcgGCCCGCCGccauGGCg -3'
miRNA:   3'- -GGgGGU--------UCCGGGG----------CGGGCGGUu---CCGg -5'
5221 5' -65.2 NC_001798.1 + 3564 0.67 0.450839
Target:  5'- aCCCCAGguggggcacGGCCCgCGCCaCGCU---GCCg -3'
miRNA:   3'- gGGGGUU---------CCGGG-GCGG-GCGGuucCGG- -5'
5221 5' -65.2 NC_001798.1 + 3830 0.69 0.34062
Target:  5'- gCCUCGGGcGCCCC-CCagagGCCGGGGCg -3'
miRNA:   3'- gGGGGUUC-CGGGGcGGg---CGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 3888 0.68 0.425571
Target:  5'- gCCCCgGGGGCggggggCCgGCCCcggGCCAcGGCUc -3'
miRNA:   3'- -GGGGgUUCCG------GGgCGGG---CGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 3962 0.74 0.179586
Target:  5'- gCgCCgGAGGCCgCGUcggcguccagcucgaCCGCCGGGGCCg -3'
miRNA:   3'- -GgGGgUUCCGGgGCG---------------GGCGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 4064 0.69 0.34062
Target:  5'- gCUCCAGgcGGCCCgCGgUCGCCGcggggguccGGGCCg -3'
miRNA:   3'- gGGGGUU--CCGGG-GCgGGCGGU---------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 4114 0.77 0.112377
Target:  5'- gCCCugggcgggcucggCCGGGGCgCCGCCC-CCGGGGCCc -3'
miRNA:   3'- -GGG-------------GGUUCCGgGGCGGGcGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 4183 0.73 0.199966
Target:  5'- gCgCCgAGGGUCCCGCCCGCgGcguGGUCu -3'
miRNA:   3'- -GgGGgUUCCGGGGCGGGCGgUu--CCGG- -5'
5221 5' -65.2 NC_001798.1 + 4728 0.66 0.494695
Target:  5'- cUCgUCGAcGGCCUC-CCCggacGCCGGGGCCg -3'
miRNA:   3'- -GGgGGUU-CCGGGGcGGG----CGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 4904 0.7 0.326554
Target:  5'- -aUCCGGGGCCgCCGgucgucUCCGCCGcGGCCc -3'
miRNA:   3'- ggGGGUUCCGG-GGC------GGGCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 4944 0.68 0.401166
Target:  5'- uCCCCCGu--CCUCGUCCGCCAucGCg -3'
miRNA:   3'- -GGGGGUuccGGGGCGGGCGGUucCGg -5'
5221 5' -65.2 NC_001798.1 + 4975 0.7 0.293295
Target:  5'- gCCCCGcGGCCCUGCgCGUCGucGUCg -3'
miRNA:   3'- gGGGGUuCCGGGGCGgGCGGUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 5303 0.69 0.355119
Target:  5'- gCCgCCGc-GCCCCgGCUCGCCGGGGUUc -3'
miRNA:   3'- -GGgGGUucCGGGG-CGGGCGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 5413 0.67 0.476908
Target:  5'- gCCgCCGccGCUCCGCCCGCgc-GGCa -3'
miRNA:   3'- -GGgGGUucCGGGGCGGGCGguuCCGg -5'
5221 5' -65.2 NC_001798.1 + 5560 0.77 0.109925
Target:  5'- gCUCCCGuuGGcCCCCGCCgGCCccaaaGGGGCCg -3'
miRNA:   3'- -GGGGGUu-CC-GGGGCGGgCGG-----UUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.