miRNA display CGI


Results 1 - 20 of 495 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 146 0.75 0.150658
Target:  5'- uCCCCCGcGGGCgCCGCCCcuccccccgcgcGCCGcgGGGCUg -3'
miRNA:   3'- -GGGGGU-UCCGgGGCGGG------------CGGU--UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 282 0.68 0.385399
Target:  5'- aCUCCCAAGcuCCCCGCCCcCCcgAAGacGCCa -3'
miRNA:   3'- -GGGGGUUCc-GGGGCGGGcGG--UUC--CGG- -5'
5221 5' -65.2 NC_001798.1 + 427 0.71 0.251261
Target:  5'- gCCCCucccCCCCGCgCGCCAcgGGGCUg -3'
miRNA:   3'- gGGGGuuccGGGGCGgGCGGU--UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 458 0.66 0.531128
Target:  5'- gUCCCGcGGCCgCCuCCC-CCGcGGCCg -3'
miRNA:   3'- gGGGGUuCCGG-GGcGGGcGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 487 0.76 0.130382
Target:  5'- uCCCCCGc-GCCCCGCCC-CgGGGGCUu -3'
miRNA:   3'- -GGGGGUucCGGGGCGGGcGgUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 653 0.68 0.38852
Target:  5'- cCCCCCGcGGGCgcgggagacgugccgCCCGCCCGaCCcccGCCc -3'
miRNA:   3'- -GGGGGU-UCCG---------------GGGCGGGC-GGuucCGG- -5'
5221 5' -65.2 NC_001798.1 + 703 0.67 0.432227
Target:  5'- aCCCCCGcccgcccgacCCCCGCCCGCCcgacccccGCCc -3'
miRNA:   3'- -GGGGGUucc-------GGGGCGGGCGGuuc-----CGG- -5'
5221 5' -65.2 NC_001798.1 + 748 0.67 0.432227
Target:  5'- aCCCCCGcccgcccgacCCCCGCCCGCCcgacccccGCCc -3'
miRNA:   3'- -GGGGGUucc-------GGGGCGGGCGGuuc-----CGG- -5'
5221 5' -65.2 NC_001798.1 + 793 0.67 0.432227
Target:  5'- aCCCCCGcccgcccgacCCCCGCCCGCCcgacccccGCCc -3'
miRNA:   3'- -GGGGGUucc-------GGGGCGGGCGGuuc-----CGG- -5'
5221 5' -65.2 NC_001798.1 + 838 0.67 0.432227
Target:  5'- aCCCCCGcccgcccgacCCCCGCCCGCCcgacccccGCCc -3'
miRNA:   3'- -GGGGGUucc-------GGGGCGGGCGGuuc-----CGG- -5'
5221 5' -65.2 NC_001798.1 + 875 0.66 0.494695
Target:  5'- nCCgCCCGAc-CCCCGCCCGCCcgacccccGCCc -3'
miRNA:   3'- -GG-GGGUUccGGGGCGGGCGGuuc-----CGG- -5'
5221 5' -65.2 NC_001798.1 + 1180 0.81 0.056069
Target:  5'- aCCUCCAc-GCCgCCGCCCGCCGcGGCCa -3'
miRNA:   3'- -GGGGGUucCGG-GGCGGGCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 1336 0.74 0.1697
Target:  5'- uCCCgCCGcGGCCCgCGCagcuCCGCCG-GGCCg -3'
miRNA:   3'- -GGG-GGUuCCGGG-GCG----GGCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 1385 0.67 0.441477
Target:  5'- gCCCCAgcgccacguagacGGGCCgcagCgGCgCGCCcAGGCCc -3'
miRNA:   3'- gGGGGU-------------UCCGG----GgCGgGCGGuUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 1504 0.69 0.377671
Target:  5'- gCgCCCGAGGCggcggCCCGgCCGUCcAGcGCCg -3'
miRNA:   3'- -GgGGGUUCCG-----GGGCgGGCGGuUC-CGG- -5'
5221 5' -65.2 NC_001798.1 + 1723 0.67 0.439787
Target:  5'- --gCCAgcacggugcggcgcAGGUCCCGCgCCGCC--GGCCa -3'
miRNA:   3'- gggGGU--------------UCCGGGGCG-GGCGGuuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 1904 0.69 0.370047
Target:  5'- gCCCCAGGaacuCCacggCGCCgGCgAAGGCCa -3'
miRNA:   3'- gGGGGUUCc---GGg---GCGGgCGgUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 2045 0.69 0.339906
Target:  5'- -gCCCAGGGCCgCCagcaggcaggacaGCCCGCCGcgcucGGCg -3'
miRNA:   3'- ggGGGUUCCGG-GG-------------CGGGCGGUu----CCGg -5'
5221 5' -65.2 NC_001798.1 + 2108 0.73 0.216298
Target:  5'- gCCCCCGgcgcggcccgcggccAGGUCCuCGCCCGgCAGcGGCg -3'
miRNA:   3'- -GGGGGU---------------UCCGGG-GCGGGCgGUU-CCGg -5'
5221 5' -65.2 NC_001798.1 + 2437 0.7 0.312924
Target:  5'- gCCCCGGcGGCUggcggcgccagCCGCCCugcggGUCGGGGCCc -3'
miRNA:   3'- gGGGGUU-CCGG-----------GGCGGG-----CGGUUCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.