miRNA display CGI


Results 1 - 20 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 74989 1.12 0.000294
Target:  5'- gCCCCCAAGGCCCCGCCCGCCAAGGCCa -3'
miRNA:   3'- -GGGGGUUCCGGGGCGGGCGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 153171 0.92 0.009545
Target:  5'- gCUCCGGGGCUCCGCCgGCCGAGGCCg -3'
miRNA:   3'- gGGGGUUCCGGGGCGGgCGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 34812 0.84 0.033719
Target:  5'- gCCCCGGGGCCCCcgcGCuCCGCCGgGGGCCc -3'
miRNA:   3'- gGGGGUUCCGGGG---CG-GGCGGU-UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 126416 0.84 0.034592
Target:  5'- uCCCCCGAGGCCCCcgGCCCugcggccaaGCUAAGGCg -3'
miRNA:   3'- -GGGGGUUCCGGGG--CGGG---------CGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 145627 0.83 0.0393
Target:  5'- gCCCCAccGCCCCGCCCGgCAgggGGGCCc -3'
miRNA:   3'- gGGGGUucCGGGGCGGGCgGU---UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 23600 0.82 0.049404
Target:  5'- cCCgCCCAGGGCCgaGCCCGCCccGGCCc -3'
miRNA:   3'- -GG-GGGUUCCGGggCGGGCGGuuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 147242 0.81 0.056069
Target:  5'- gCCCCGGGGCCCCggGCCgCGCCGGcGGCg -3'
miRNA:   3'- gGGGGUUCCGGGG--CGG-GCGGUU-CCGg -5'
5221 5' -65.2 NC_001798.1 + 1180 0.81 0.056069
Target:  5'- aCCUCCAc-GCCgCCGCCCGCCGcGGCCa -3'
miRNA:   3'- -GGGGGUucCGG-GGCGGGCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 74627 0.8 0.062021
Target:  5'- aCCCCUggGGCCgaCCgGCCCcCCGAGGCCc -3'
miRNA:   3'- -GGGGGuuCCGG--GG-CGGGcGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 75996 0.8 0.063442
Target:  5'- gCCCCgggcgccggcggCAGGGCCCCguGCCCGCCcgcccugggccccGAGGCCa -3'
miRNA:   3'- -GGGG------------GUUCCGGGG--CGGGCGG-------------UUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 134158 0.8 0.065058
Target:  5'- gCCCCCGGGGCCgucgcggCCGCCCGCgccgCGAcGGCCc -3'
miRNA:   3'- -GGGGGUUCCGG-------GGCGGGCG----GUU-CCGG- -5'
5221 5' -65.2 NC_001798.1 + 82063 0.8 0.065222
Target:  5'- cCCCCCGGGGCCCCG-CgGCC--GGCCc -3'
miRNA:   3'- -GGGGGUUCCGGGGCgGgCGGuuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 120220 0.79 0.072108
Target:  5'- gCCCC-GGGCCguuggCC-CCCGCCGAGGCCa -3'
miRNA:   3'- gGGGGuUCCGG-----GGcGGGCGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 103137 0.79 0.077726
Target:  5'- gUUCCAAGGCgCCGCCCGauggcgcaCAGGGCCa -3'
miRNA:   3'- gGGGGUUCCGgGGCGGGCg-------GUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 30431 0.79 0.077726
Target:  5'- gCCCCC--GGCCCgGCCCccgGCCGAGcGCCa -3'
miRNA:   3'- -GGGGGuuCCGGGgCGGG---CGGUUC-CGG- -5'
5221 5' -65.2 NC_001798.1 + 58667 0.79 0.07969
Target:  5'- gUCCCGAGGCCCgccaccacCGCcgCCGUCAGGGCCg -3'
miRNA:   3'- gGGGGUUCCGGG--------GCG--GGCGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 27917 0.78 0.083761
Target:  5'- gCCgCCGGGGuCCCCG-CCGCCGGGGUCc -3'
miRNA:   3'- -GGgGGUUCC-GGGGCgGGCGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 80573 0.78 0.084599
Target:  5'- cUCCCCGAGGCCCC-CCaCGCCcucuaccgacccacGGGCCa -3'
miRNA:   3'- -GGGGGUUCCGGGGcGG-GCGGu-------------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 58096 0.78 0.085871
Target:  5'- gCCCCgCAGGGUCgCGgCCGCCcAGGGCCc -3'
miRNA:   3'- -GGGG-GUUCCGGgGCgGGCGG-UUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 28968 0.78 0.085871
Target:  5'- gCCCCGccGCUCCGCCCGCCccagGGGGCg -3'
miRNA:   3'- gGGGGUucCGGGGCGGGCGG----UUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.