miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 3' -57 NC_001798.1 + 95789 0.66 0.896181
Target:  5'- gCUCuaGGGGcGGGggUGGGGgGGUCGAa -3'
miRNA:   3'- -GAGcaCCCC-CUCaaACUCUgCCGGCU- -5'
5226 3' -57 NC_001798.1 + 15194 0.66 0.896181
Target:  5'- --gGUGGGGGGGcu---GGCGaGCCGGg -3'
miRNA:   3'- gagCACCCCCUCaaacuCUGC-CGGCU- -5'
5226 3' -57 NC_001798.1 + 101016 0.66 0.896181
Target:  5'- -gCGgaggGGGGcGGGUUUGAcGAggccaaguUGGCCGAg -3'
miRNA:   3'- gaGCa---CCCC-CUCAAACU-CU--------GCCGGCU- -5'
5226 3' -57 NC_001798.1 + 146073 0.66 0.893585
Target:  5'- -aCGgGGGGGAGggguccggggcGAGGCGGgCGGg -3'
miRNA:   3'- gaGCaCCCCCUCaaa--------CUCUGCCgGCU- -5'
5226 3' -57 NC_001798.1 + 98562 0.66 0.889625
Target:  5'- gUCGUGGGGGcgcuGGUggccgcggUGGcgucGGCGGCCc- -3'
miRNA:   3'- gAGCACCCCC----UCAa-------ACU----CUGCCGGcu -5'
5226 3' -57 NC_001798.1 + 107069 0.66 0.868653
Target:  5'- aUCGgGGGGGAGgcu--GugGGCCc- -3'
miRNA:   3'- gAGCaCCCCCUCaaacuCugCCGGcu -5'
5226 3' -57 NC_001798.1 + 67167 0.66 0.868653
Target:  5'- aCUCGUGGccccauggaaaGGGGGgagGAGGgGGCgGGg -3'
miRNA:   3'- -GAGCACC-----------CCCUCaaaCUCUgCCGgCU- -5'
5226 3' -57 NC_001798.1 + 27551 0.67 0.863488
Target:  5'- -gCG-GGGGGAGgggcggcgcccgcggGGGAgCGGCCGGc -3'
miRNA:   3'- gaGCaCCCCCUCaaa------------CUCU-GCCGGCU- -5'
5226 3' -57 NC_001798.1 + 73654 0.67 0.853633
Target:  5'- ----cGGGGGGGUUc-GGGCGGCgGAa -3'
miRNA:   3'- gagcaCCCCCUCAAacUCUGCCGgCU- -5'
5226 3' -57 NC_001798.1 + 6246 0.67 0.853633
Target:  5'- -aCGggcGGGGGAcGgg-GGGACGgGCCGGg -3'
miRNA:   3'- gaGCa--CCCCCU-CaaaCUCUGC-CGGCU- -5'
5226 3' -57 NC_001798.1 + 129865 0.67 0.845828
Target:  5'- ----cGGGGGAGgagGGGGguggUGGCCGAa -3'
miRNA:   3'- gagcaCCCCCUCaaaCUCU----GCCGGCU- -5'
5226 3' -57 NC_001798.1 + 36287 0.67 0.837835
Target:  5'- -gCGgGGGGGGGUgccgugggUGuGGCGGCgGGg -3'
miRNA:   3'- gaGCaCCCCCUCAa-------ACuCUGCCGgCU- -5'
5226 3' -57 NC_001798.1 + 148174 0.67 0.821312
Target:  5'- gUCGUGGuGGGccguGUUguGGugGGCCGu -3'
miRNA:   3'- gAGCACC-CCCu---CAAacUCugCCGGCu -5'
5226 3' -57 NC_001798.1 + 11357 0.67 0.818774
Target:  5'- uUUGggGGGGGuGUUUGGGugGGaucgcagcucggcuCCGAg -3'
miRNA:   3'- gAGCa-CCCCCuCAAACUCugCC--------------GGCU- -5'
5226 3' -57 NC_001798.1 + 6610 0.68 0.812796
Target:  5'- -cCG-GGGGGAcGgg-GGGACGgGCCGGg -3'
miRNA:   3'- gaGCaCCCCCU-CaaaCUCUGC-CGGCU- -5'
5226 3' -57 NC_001798.1 + 6568 0.68 0.812796
Target:  5'- -cCG-GGGGGAcGgg-GGGACGgGCCGGg -3'
miRNA:   3'- gaGCaCCCCCU-CaaaCUCUGC-CGGCU- -5'
5226 3' -57 NC_001798.1 + 144556 0.68 0.811936
Target:  5'- -cCGUGGGGGGGcgUUcGAaagggcgaggacgGGCGGCUGGg -3'
miRNA:   3'- gaGCACCCCCUCa-AA-CU-------------CUGCCGGCU- -5'
5226 3' -57 NC_001798.1 + 6526 0.68 0.795295
Target:  5'- -aCG-GGGGGAcGgg-GGGACGgGCCGGg -3'
miRNA:   3'- gaGCaCCCCCU-CaaaCUCUGC-CGGCU- -5'
5226 3' -57 NC_001798.1 + 146293 0.68 0.786326
Target:  5'- -cCGaGcGGGGAGU---GGGCGGCCGGg -3'
miRNA:   3'- gaGCaC-CCCCUCAaacUCUGCCGGCU- -5'
5226 3' -57 NC_001798.1 + 16227 0.68 0.767993
Target:  5'- -cUGUGGGGGGGcggUGGGGCcggGGCCc- -3'
miRNA:   3'- gaGCACCCCCUCaa-ACUCUG---CCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.