Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5226 | 3' | -57 | NC_001798.1 | + | 6246 | 0.67 | 0.853633 |
Target: 5'- -aCGggcGGGGGAcGgg-GGGACGgGCCGGg -3' miRNA: 3'- gaGCa--CCCCCU-CaaaCUCUGC-CGGCU- -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 6526 | 0.68 | 0.795295 |
Target: 5'- -aCG-GGGGGAcGgg-GGGACGgGCCGGg -3' miRNA: 3'- gaGCaCCCCCU-CaaaCUCUGC-CGGCU- -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 6568 | 0.68 | 0.812796 |
Target: 5'- -cCG-GGGGGAcGgg-GGGACGgGCCGGg -3' miRNA: 3'- gaGCaCCCCCU-CaaaCUCUGC-CGGCU- -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 6610 | 0.68 | 0.812796 |
Target: 5'- -cCG-GGGGGAcGgg-GGGACGgGCCGGg -3' miRNA: 3'- gaGCaCCCCCU-CaaaCUCUGC-CGGCU- -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 11357 | 0.67 | 0.818774 |
Target: 5'- uUUGggGGGGGuGUUUGGGugGGaucgcagcucggcuCCGAg -3' miRNA: 3'- gAGCa-CCCCCuCAAACUCugCC--------------GGCU- -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 15194 | 0.66 | 0.896181 |
Target: 5'- --gGUGGGGGGGcu---GGCGaGCCGGg -3' miRNA: 3'- gagCACCCCCUCaaacuCUGC-CGGCU- -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 15678 | 0.76 | 0.378077 |
Target: 5'- uCUCGUcgGGGGGAGUagugguugcgGGGGCGGUCGGu -3' miRNA: 3'- -GAGCA--CCCCCUCAaa--------CUCUGCCGGCU- -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 16227 | 0.68 | 0.767993 |
Target: 5'- -cUGUGGGGGGGcggUGGGGCcggGGCCc- -3' miRNA: 3'- gaGCACCCCCUCaa-ACUCUG---CCGGcu -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 27229 | 0.72 | 0.564262 |
Target: 5'- -gCGcGGGGGAGgcggccgcggggGAGGCGGCCGc -3' miRNA: 3'- gaGCaCCCCCUCaaa---------CUCUGCCGGCu -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 27551 | 0.67 | 0.863488 |
Target: 5'- -gCG-GGGGGAGgggcggcgcccgcggGGGAgCGGCCGGc -3' miRNA: 3'- gaGCaCCCCCUCaaa------------CUCU-GCCGGCU- -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 32961 | 0.72 | 0.590193 |
Target: 5'- --aGUGGGGGGGg--GGGACGGacaCGGc -3' miRNA: 3'- gagCACCCCCUCaaaCUCUGCCg--GCU- -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 36287 | 0.67 | 0.837835 |
Target: 5'- -gCGgGGGGGGGUgccgugggUGuGGCGGCgGGg -3' miRNA: 3'- gaGCaCCCCCUCAa-------ACuCUGCCGgCU- -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 41444 | 0.69 | 0.717326 |
Target: 5'- -gCGUGGGGGguccaugccccgccGGgg-GGGGCGGUCGGc -3' miRNA: 3'- gaGCACCCCC--------------UCaaaCUCUGCCGGCU- -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 61156 | 0.69 | 0.743468 |
Target: 5'- gCUCGggggaGGGGGAGggggggaagagaGAGAUGGUCGGc -3' miRNA: 3'- -GAGCa----CCCCCUCaaa---------CUCUGCCGGCU- -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 67167 | 0.66 | 0.868653 |
Target: 5'- aCUCGUGGccccauggaaaGGGGGgagGAGGgGGCgGGg -3' miRNA: 3'- -GAGCACC-----------CCCUCaaaCUCUgCCGgCU- -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 71693 | 1.09 | 0.00267 |
Target: 5'- gCUCGUGGGGGAGUUUGAGACGGCCGAg -3' miRNA: 3'- -GAGCACCCCCUCAAACUCUGCCGGCU- -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 73654 | 0.67 | 0.853633 |
Target: 5'- ----cGGGGGGGUUc-GGGCGGCgGAa -3' miRNA: 3'- gagcaCCCCCUCAAacUCUGCCGgCU- -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 85823 | 0.7 | 0.680699 |
Target: 5'- -aCG-GGGGGGGgcgGGGGCGGgCGGg -3' miRNA: 3'- gaGCaCCCCCUCaaaCUCUGCCgGCU- -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 95789 | 0.66 | 0.896181 |
Target: 5'- gCUCuaGGGGcGGGggUGGGGgGGUCGAa -3' miRNA: 3'- -GAGcaCCCC-CUCaaACUCUgCCGGCU- -5' |
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5226 | 3' | -57 | NC_001798.1 | + | 98562 | 0.66 | 0.889625 |
Target: 5'- gUCGUGGGGGcgcuGGUggccgcggUGGcgucGGCGGCCc- -3' miRNA: 3'- gAGCACCCCC----UCAa-------ACU----CUGCCGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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