miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 3' -57 NC_001798.1 + 148174 0.67 0.821312
Target:  5'- gUCGUGGuGGGccguGUUguGGugGGCCGu -3'
miRNA:   3'- gAGCACC-CCCu---CAAacUCugCCGGCu -5'
5226 3' -57 NC_001798.1 + 146293 0.68 0.786326
Target:  5'- -cCGaGcGGGGAGU---GGGCGGCCGGg -3'
miRNA:   3'- gaGCaC-CCCCUCAaacUCUGCCGGCU- -5'
5226 3' -57 NC_001798.1 + 146073 0.66 0.893585
Target:  5'- -aCGgGGGGGAGggguccggggcGAGGCGGgCGGg -3'
miRNA:   3'- gaGCaCCCCCUCaaa--------CUCUGCCgGCU- -5'
5226 3' -57 NC_001798.1 + 144556 0.68 0.811936
Target:  5'- -cCGUGGGGGGGcgUUcGAaagggcgaggacgGGCGGCUGGg -3'
miRNA:   3'- gaGCACCCCCUCa-AA-CU-------------CUGCCGGCU- -5'
5226 3' -57 NC_001798.1 + 129865 0.67 0.845828
Target:  5'- ----cGGGGGAGgagGGGGguggUGGCCGAa -3'
miRNA:   3'- gagcaCCCCCUCaaaCUCU----GCCGGCU- -5'
5226 3' -57 NC_001798.1 + 126721 0.77 0.332375
Target:  5'- gCUCGUGGGGGAGUgcgcucuucgcGCGGCCGc -3'
miRNA:   3'- -GAGCACCCCCUCAaacuc------UGCCGGCu -5'
5226 3' -57 NC_001798.1 + 125652 0.69 0.720259
Target:  5'- aUCGcGGGcGAGgcgGGGGCGGCUGAg -3'
miRNA:   3'- gAGCaCCCcCUCaaaCUCUGCCGGCU- -5'
5226 3' -57 NC_001798.1 + 114574 0.75 0.38623
Target:  5'- gUCcUGGGGGcGUUUGAGcgcggcACGGCCGAc -3'
miRNA:   3'- gAGcACCCCCuCAAACUC------UGCCGGCU- -5'
5226 3' -57 NC_001798.1 + 107403 0.69 0.739634
Target:  5'- --gGUGGcGGGAGgacUGGGGCcGGCUGAc -3'
miRNA:   3'- gagCACC-CCCUCaa-ACUCUG-CCGGCU- -5'
5226 3' -57 NC_001798.1 + 107069 0.66 0.868653
Target:  5'- aUCGgGGGGGAGgcu--GugGGCCc- -3'
miRNA:   3'- gAGCaCCCCCUCaaacuCugCCGGcu -5'
5226 3' -57 NC_001798.1 + 101832 0.69 0.739634
Target:  5'- gCUCGcggcgGGGGGAGgcgUGGGucccggcgGCGGCgGAg -3'
miRNA:   3'- -GAGCa----CCCCCUCaa-ACUC--------UGCCGgCU- -5'
5226 3' -57 NC_001798.1 + 101016 0.66 0.896181
Target:  5'- -gCGgaggGGGGcGGGUUUGAcGAggccaaguUGGCCGAg -3'
miRNA:   3'- gaGCa---CCCC-CUCAAACU-CU--------GCCGGCU- -5'
5226 3' -57 NC_001798.1 + 98562 0.66 0.889625
Target:  5'- gUCGUGGGGGcgcuGGUggccgcggUGGcgucGGCGGCCc- -3'
miRNA:   3'- gAGCACCCCC----UCAa-------ACU----CUGCCGGcu -5'
5226 3' -57 NC_001798.1 + 95789 0.66 0.896181
Target:  5'- gCUCuaGGGGcGGGggUGGGGgGGUCGAa -3'
miRNA:   3'- -GAGcaCCCC-CUCaaACUCUgCCGGCU- -5'
5226 3' -57 NC_001798.1 + 85823 0.7 0.680699
Target:  5'- -aCG-GGGGGGGgcgGGGGCGGgCGGg -3'
miRNA:   3'- gaGCaCCCCCUCaaaCUCUGCCgGCU- -5'
5226 3' -57 NC_001798.1 + 73654 0.67 0.853633
Target:  5'- ----cGGGGGGGUUc-GGGCGGCgGAa -3'
miRNA:   3'- gagcaCCCCCUCAAacUCUGCCGgCU- -5'
5226 3' -57 NC_001798.1 + 71693 1.09 0.00267
Target:  5'- gCUCGUGGGGGAGUUUGAGACGGCCGAg -3'
miRNA:   3'- -GAGCACCCCCUCAAACUCUGCCGGCU- -5'
5226 3' -57 NC_001798.1 + 67167 0.66 0.868653
Target:  5'- aCUCGUGGccccauggaaaGGGGGgagGAGGgGGCgGGg -3'
miRNA:   3'- -GAGCACC-----------CCCUCaaaCUCUgCCGgCU- -5'
5226 3' -57 NC_001798.1 + 61156 0.69 0.743468
Target:  5'- gCUCGggggaGGGGGAGggggggaagagaGAGAUGGUCGGc -3'
miRNA:   3'- -GAGCa----CCCCCUCaaa---------CUCUGCCGGCU- -5'
5226 3' -57 NC_001798.1 + 41444 0.69 0.717326
Target:  5'- -gCGUGGGGGguccaugccccgccGGgg-GGGGCGGUCGGc -3'
miRNA:   3'- gaGCACCCCC--------------UCaaaCUCUGCCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.