Results 1 - 20 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5226 | 3' | -57 | NC_001798.1 | + | 71693 | 1.09 | 0.00267 |
Target: 5'- gCUCGUGGGGGAGUUUGAGACGGCCGAg -3' miRNA: 3'- -GAGCACCCCCUCAAACUCUGCCGGCU- -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 126721 | 0.77 | 0.332375 |
Target: 5'- gCUCGUGGGGGAGUgcgcucuucgcGCGGCCGc -3' miRNA: 3'- -GAGCACCCCCUCAaacuc------UGCCGGCu -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 15678 | 0.76 | 0.378077 |
Target: 5'- uCUCGUcgGGGGGAGUagugguugcgGGGGCGGUCGGu -3' miRNA: 3'- -GAGCA--CCCCCUCAaa--------CUCUGCCGGCU- -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 114574 | 0.75 | 0.38623 |
Target: 5'- gUCcUGGGGGcGUUUGAGcgcggcACGGCCGAc -3' miRNA: 3'- gAGcACCCCCuCAAACUC------UGCCGGCU- -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 32961 | 0.72 | 0.590193 |
Target: 5'- --aGUGGGGGGGg--GGGACGGacaCGGc -3' miRNA: 3'- gagCACCCCCUCaaaCUCUGCCg--GCU- -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 27229 | 0.72 | 0.564262 |
Target: 5'- -gCGcGGGGGAGgcggccgcggggGAGGCGGCCGc -3' miRNA: 3'- gaGCaCCCCCUCaaa---------CUCUGCCGGCu -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 85823 | 0.7 | 0.680699 |
Target: 5'- -aCG-GGGGGGGgcgGGGGCGGgCGGg -3' miRNA: 3'- gaGCaCCCCCUCaaaCUCUGCCgGCU- -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 101832 | 0.69 | 0.739634 |
Target: 5'- gCUCGcggcgGGGGGAGgcgUGGGucccggcgGCGGCgGAg -3' miRNA: 3'- -GAGCa----CCCCCUCaa-ACUC--------UGCCGgCU- -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 41444 | 0.69 | 0.717326 |
Target: 5'- -gCGUGGGGGguccaugccccgccGGgg-GGGGCGGUCGGc -3' miRNA: 3'- gaGCACCCCC--------------UCaaaCUCUGCCGGCU- -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 61156 | 0.69 | 0.743468 |
Target: 5'- gCUCGggggaGGGGGAGggggggaagagaGAGAUGGUCGGc -3' miRNA: 3'- -GAGCa----CCCCCUCaaa---------CUCUGCCGGCU- -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 107403 | 0.69 | 0.739634 |
Target: 5'- --gGUGGcGGGAGgacUGGGGCcGGCUGAc -3' miRNA: 3'- gagCACC-CCCUCaa-ACUCUG-CCGGCU- -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 125652 | 0.69 | 0.720259 |
Target: 5'- aUCGcGGGcGAGgcgGGGGCGGCUGAg -3' miRNA: 3'- gAGCaCCCcCUCaaaCUCUGCCGGCU- -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 6610 | 0.68 | 0.812796 |
Target: 5'- -cCG-GGGGGAcGgg-GGGACGgGCCGGg -3' miRNA: 3'- gaGCaCCCCCU-CaaaCUCUGC-CGGCU- -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 16227 | 0.68 | 0.767993 |
Target: 5'- -cUGUGGGGGGGcggUGGGGCcggGGCCc- -3' miRNA: 3'- gaGCACCCCCUCaa-ACUCUG---CCGGcu -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 146293 | 0.68 | 0.786326 |
Target: 5'- -cCGaGcGGGGAGU---GGGCGGCCGGg -3' miRNA: 3'- gaGCaC-CCCCUCAaacUCUGCCGGCU- -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 6526 | 0.68 | 0.795295 |
Target: 5'- -aCG-GGGGGAcGgg-GGGACGgGCCGGg -3' miRNA: 3'- gaGCaCCCCCU-CaaaCUCUGC-CGGCU- -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 144556 | 0.68 | 0.811936 |
Target: 5'- -cCGUGGGGGGGcgUUcGAaagggcgaggacgGGCGGCUGGg -3' miRNA: 3'- gaGCACCCCCUCa-AA-CU-------------CUGCCGGCU- -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 6568 | 0.68 | 0.812796 |
Target: 5'- -cCG-GGGGGAcGgg-GGGACGgGCCGGg -3' miRNA: 3'- gaGCaCCCCCU-CaaaCUCUGC-CGGCU- -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 11357 | 0.67 | 0.818774 |
Target: 5'- uUUGggGGGGGuGUUUGGGugGGaucgcagcucggcuCCGAg -3' miRNA: 3'- gAGCa-CCCCCuCAAACUCugCC--------------GGCU- -5' |
|||||||
5226 | 3' | -57 | NC_001798.1 | + | 148174 | 0.67 | 0.821312 |
Target: 5'- gUCGUGGuGGGccguGUUguGGugGGCCGu -3' miRNA: 3'- gAGCACC-CCCu---CAAacUCugCCGGCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home