miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 5' -66 NC_001798.1 + 28998 0.7 0.274922
Target:  5'- gCGCCGGCCAaCCgCGcGCCgCC-GCGCGg -3'
miRNA:   3'- -GCGGCCGGUcGG-GU-CGGaGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 30429 0.67 0.386509
Target:  5'- aCGCCc-CCGGCCCGGCCcCCggccgaGCGCc -3'
miRNA:   3'- -GCGGccGGUCGGGUCGGaGGa-----CGCGc -5'
5226 5' -66 NC_001798.1 + 32392 0.66 0.461145
Target:  5'- -cCCGGC--GCCCGGCCUCaC-GCGCu -3'
miRNA:   3'- gcGGCCGguCGGGUCGGAG-GaCGCGc -5'
5226 5' -66 NC_001798.1 + 32795 0.66 0.435398
Target:  5'- gCGCCGGCCGGCgacGCC-CCcGCGgGc -3'
miRNA:   3'- -GCGGCCGGUCGgguCGGaGGaCGCgC- -5'
5226 5' -66 NC_001798.1 + 33245 0.66 0.469905
Target:  5'- aGCCGG--GGCCCGGCCUCguuCUG-GCu -3'
miRNA:   3'- gCGGCCggUCGGGUCGGAG---GACgCGc -5'
5226 5' -66 NC_001798.1 + 34794 0.73 0.161485
Target:  5'- cCGCCGGCgCGGCCCggggccccggGGCC-CCcGCGCu -3'
miRNA:   3'- -GCGGCCG-GUCGGG----------UCGGaGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 35401 0.68 0.348632
Target:  5'- gGCCGGCCGccggauGCCCgcgggGGCCUaaUGCgGCGg -3'
miRNA:   3'- gCGGCCGGU------CGGG-----UCGGAggACG-CGC- -5'
5226 5' -66 NC_001798.1 + 35471 0.66 0.469905
Target:  5'- uGCUGGCCcgcGGCCC-GUCUgCUGgccCGCGg -3'
miRNA:   3'- gCGGCCGG---UCGGGuCGGAgGAC---GCGC- -5'
5226 5' -66 NC_001798.1 + 35555 0.77 0.087503
Target:  5'- uGCCGGcCCGGCCCGGCC-CCggagcccgcgGCGCu -3'
miRNA:   3'- gCGGCC-GGUCGGGUCGGaGGa---------CGCGc -5'
5226 5' -66 NC_001798.1 + 35744 0.68 0.327209
Target:  5'- cCGcCCGGCCGcccacuccccGCUCGGCCUCUccgGCuGCGg -3'
miRNA:   3'- -GC-GGCCGGU----------CGGGUCGGAGGa--CG-CGC- -5'
5226 5' -66 NC_001798.1 + 36230 0.69 0.298882
Target:  5'- cCGCCGcGCCcgcguuucugccGCCCGcGCgCUCCUGUGUGg -3'
miRNA:   3'- -GCGGC-CGGu-----------CGGGU-CG-GAGGACGCGC- -5'
5226 5' -66 NC_001798.1 + 37161 0.66 0.461145
Target:  5'- gCGCCGcGCC-GCCUGGCgggCCgcucgGCGCGc -3'
miRNA:   3'- -GCGGC-CGGuCGGGUCGga-GGa----CGCGC- -5'
5226 5' -66 NC_001798.1 + 38485 0.69 0.312128
Target:  5'- aCGCCGGCaucGCCCcggAGUCUCCgccccacccgccGCGCGc -3'
miRNA:   3'- -GCGGCCGgu-CGGG---UCGGAGGa-----------CGCGC- -5'
5226 5' -66 NC_001798.1 + 43066 0.7 0.281074
Target:  5'- cCGCCGGCCGagcGCgCCGGgCUCggGCGCc -3'
miRNA:   3'- -GCGGCCGGU---CG-GGUCgGAGgaCGCGc -5'
5226 5' -66 NC_001798.1 + 46102 0.66 0.478749
Target:  5'- aCGCacaGGCguGCCCGGagggCCaGCGCGu -3'
miRNA:   3'- -GCGg--CCGguCGGGUCgga-GGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 47816 0.67 0.418703
Target:  5'- uCGCgGGCUcucacGGcCCCGGCC-CC-GCGCGc -3'
miRNA:   3'- -GCGgCCGG-----UC-GGGUCGGaGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 53453 0.72 0.204505
Target:  5'- gGgCGGCCAGCUgAGCCgcgccaUCCUaGCGCa -3'
miRNA:   3'- gCgGCCGGUCGGgUCGG------AGGA-CGCGc -5'
5226 5' -66 NC_001798.1 + 54581 0.66 0.447311
Target:  5'- gGCCGGCCGGCCaCguauuacacgcauauGGCCggg-GCGCc -3'
miRNA:   3'- gCGGCCGGUCGG-G---------------UCGGaggaCGCGc -5'
5226 5' -66 NC_001798.1 + 56245 0.66 0.435398
Target:  5'- cCGgCGGCCgGGCCCGGCC-CCggaguuacCGCa -3'
miRNA:   3'- -GCgGCCGG-UCGGGUCGGaGGac------GCGc -5'
5226 5' -66 NC_001798.1 + 58826 0.72 0.199791
Target:  5'- uCGUCGGCCAGCaCCAGCagcgCC-GCGUa -3'
miRNA:   3'- -GCGGCCGGUCG-GGUCGga--GGaCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.