miRNA display CGI


Results 21 - 40 of 157 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 5' -66 NC_001798.1 + 21698 0.72 0.190647
Target:  5'- cCGCCGcuGCCGuCCCGGUCUCCgccGCGCa -3'
miRNA:   3'- -GCGGC--CGGUcGGGUCGGAGGa--CGCGc -5'
5226 5' -66 NC_001798.1 + 23714 0.66 0.455931
Target:  5'- gGCCGGgCGGCCCcggcgggucgaGcuggacgccgacgcgGCCUCCgGCGCc -3'
miRNA:   3'- gCGGCCgGUCGGG-----------U---------------CGGAGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 23809 0.72 0.181872
Target:  5'- gGCCcggGGCCGGCCCcccGCCcCCgggGCGCGu -3'
miRNA:   3'- gCGG---CCGGUCGGGu--CGGaGGa--CGCGC- -5'
5226 5' -66 NC_001798.1 + 23850 0.67 0.410502
Target:  5'- gGCgGGCUGGgcgacagccgcCCCGGCCUCUgggggGCGCc -3'
miRNA:   3'- gCGgCCGGUC-----------GGGUCGGAGGa----CGCGc -5'
5226 5' -66 NC_001798.1 + 24065 0.71 0.224332
Target:  5'- gCGCUGGaCCAGgCCuGCUUCCggaucucggGCGCGg -3'
miRNA:   3'- -GCGGCC-GGUCgGGuCGGAGGa--------CGCGC- -5'
5226 5' -66 NC_001798.1 + 24490 0.67 0.402402
Target:  5'- gCGCCugagcGCCGcGCCC-GCCUCC-GCGCc -3'
miRNA:   3'- -GCGGc----CGGU-CGGGuCGGAGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 24586 0.7 0.267085
Target:  5'- gGCgGGCCGcguggccguggaguGCCUGGCCgCCUGcCGCGg -3'
miRNA:   3'- gCGgCCGGU--------------CGGGUCGGaGGAC-GCGC- -5'
5226 5' -66 NC_001798.1 + 24681 0.75 0.123727
Target:  5'- gGCUGGCCggAGCCCGGCCcgCC-GCGCc -3'
miRNA:   3'- gCGGCCGG--UCGGGUCGGa-GGaCGCGc -5'
5226 5' -66 NC_001798.1 + 24728 0.68 0.361208
Target:  5'- gGCgCGGCCGcCCCGccgcacgccgacgcGCCccgCCUGCGCGc -3'
miRNA:   3'- gCG-GCCGGUcGGGU--------------CGGa--GGACGCGC- -5'
5226 5' -66 NC_001798.1 + 25024 0.68 0.341381
Target:  5'- uCGCUcGCCGcGCCC-GCCUCC-GCGCc -3'
miRNA:   3'- -GCGGcCGGU-CGGGuCGGAGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 25272 0.71 0.229538
Target:  5'- cCGCCaGCCgccggGGCCCAGCCacacgCCgGCGCc -3'
miRNA:   3'- -GCGGcCGG-----UCGGGUCGGa----GGaCGCGc -5'
5226 5' -66 NC_001798.1 + 25308 0.66 0.461145
Target:  5'- -cUCGGCCGccGCCCuggaGGCCUaCUGCGCc -3'
miRNA:   3'- gcGGCCGGU--CGGG----UCGGAgGACGCGc -5'
5226 5' -66 NC_001798.1 + 25426 0.68 0.355992
Target:  5'- uCGCUGGCCGcgcgcugcgccGCCCcGCCccCCggcgGCGCGc -3'
miRNA:   3'- -GCGGCCGGU-----------CGGGuCGGa-GGa---CGCGC- -5'
5226 5' -66 NC_001798.1 + 25690 0.74 0.146682
Target:  5'- uGCgGGCCcGCCaCGGCCgCCUGgGCGg -3'
miRNA:   3'- gCGgCCGGuCGG-GUCGGaGGACgCGC- -5'
5226 5' -66 NC_001798.1 + 25961 0.67 0.37872
Target:  5'- gCGCUGGCCGGC--GGCgCgggaCCUGCGCc -3'
miRNA:   3'- -GCGGCCGGUCGggUCG-Ga---GGACGCGc -5'
5226 5' -66 NC_001798.1 + 26190 0.71 0.209315
Target:  5'- gCGCUGGaCGGCCgGGCCgccgCCUcggGCGCGg -3'
miRNA:   3'- -GCGGCCgGUCGGgUCGGa---GGA---CGCGC- -5'
5226 5' -66 NC_001798.1 + 26344 0.7 0.274922
Target:  5'- aCGCCGuGCgcggCGGCCCGGCggagCUGCGCGg -3'
miRNA:   3'- -GCGGC-CG----GUCGGGUCGgag-GACGCGC- -5'
5226 5' -66 NC_001798.1 + 27947 0.72 0.181872
Target:  5'- gCGCCGGCCGcGcCCCGGCgCUCCagccgUGcCGCGc -3'
miRNA:   3'- -GCGGCCGGU-C-GGGUCG-GAGG-----AC-GCGC- -5'
5226 5' -66 NC_001798.1 + 28077 0.72 0.204505
Target:  5'- gCGCCGGCCGcGUCCucgCUCCUGCgGCGc -3'
miRNA:   3'- -GCGGCCGGU-CGGGucgGAGGACG-CGC- -5'
5226 5' -66 NC_001798.1 + 28873 0.68 0.348632
Target:  5'- gGCCGGCgGaGCCCcggAGCUccgaaggUCUGCGCGa -3'
miRNA:   3'- gCGGCCGgU-CGGG---UCGGa------GGACGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.