miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 5' -66 NC_001798.1 + 1196 0.68 0.36346
Target:  5'- cCGCCgcGGCCAGCaCC-GUC-CCcGCGCGg -3'
miRNA:   3'- -GCGG--CCGGUCG-GGuCGGaGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 1223 0.67 0.37872
Target:  5'- gGCCcgcGGCCGacGCCCAGCgUaUCUGCGgGg -3'
miRNA:   3'- gCGG---CCGGU--CGGGUCGgA-GGACGCgC- -5'
5226 5' -66 NC_001798.1 + 1504 0.72 0.204505
Target:  5'- gCGCCcgaGGCggCGGCCCGGCCgUCCaGCGCc -3'
miRNA:   3'- -GCGG---CCG--GUCGGGUCGG-AGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 1663 0.66 0.435398
Target:  5'- aGgCGcGCguGCgCGGCCUCCacgcGCGCGa -3'
miRNA:   3'- gCgGC-CGguCGgGUCGGAGGa---CGCGC- -5'
5226 5' -66 NC_001798.1 + 1751 0.69 0.300186
Target:  5'- cCGCCGGCCAGCgCaCGGCgcaCUGCacgGCGg -3'
miRNA:   3'- -GCGGCCGGUCG-G-GUCGgagGACG---CGC- -5'
5226 5' -66 NC_001798.1 + 1891 0.74 0.150262
Target:  5'- gCGCCGGCCAGCagccCCAGgaaCUCCacgGCGCc -3'
miRNA:   3'- -GCGGCCGGUCG----GGUCg--GAGGa--CGCGc -5'
5226 5' -66 NC_001798.1 + 2285 0.69 0.306777
Target:  5'- gCGCgCGGCCAGCgaGGCCagCgcGCGCGg -3'
miRNA:   3'- -GCG-GCCGGUCGggUCGGagGa-CGCGC- -5'
5226 5' -66 NC_001798.1 + 2367 0.7 0.250821
Target:  5'- aGCuCGGCCAcgGCCCgcggggcgcaguaGGCCUCCaGgGCGg -3'
miRNA:   3'- gCG-GCCGGU--CGGG-------------UCGGAGGaCgCGC- -5'
5226 5' -66 NC_001798.1 + 2445 0.7 0.26294
Target:  5'- gGCUGG-CGGCgCCAGCCgcCCUGCGgGu -3'
miRNA:   3'- gCGGCCgGUCG-GGUCGGa-GGACGCgC- -5'
5226 5' -66 NC_001798.1 + 2483 0.66 0.443889
Target:  5'- gGCgGGCCGGCgggUCAGCg-CCgcgggGCGCGg -3'
miRNA:   3'- gCGgCCGGUCG---GGUCGgaGGa----CGCGC- -5'
5226 5' -66 NC_001798.1 + 2877 0.68 0.341381
Target:  5'- cCGCCGGCCAcGCgCAGgUcCCcGCGCa -3'
miRNA:   3'- -GCGGCCGGU-CGgGUCgGaGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 2986 0.76 0.10942
Target:  5'- gGgCGGCCGGCCCgcgGGCC-CCggGCGCGg -3'
miRNA:   3'- gCgGCCGGUCGGG---UCGGaGGa-CGCGC- -5'
5226 5' -66 NC_001798.1 + 3122 0.7 0.268877
Target:  5'- --aCGGCCacgcGGCCC-GCCUCC-GCGCGc -3'
miRNA:   3'- gcgGCCGG----UCGGGuCGGAGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 3456 0.73 0.16539
Target:  5'- gGCUGGUCAGCaggaAGcCCUUCUGCGCGc -3'
miRNA:   3'- gCGGCCGGUCGgg--UC-GGAGGACGCGC- -5'
5226 5' -66 NC_001798.1 + 3794 0.69 0.320288
Target:  5'- gCGCCcgaGGCCucgaaccgGGCCCGcGCCUCCUcCGCc -3'
miRNA:   3'- -GCGG---CCGG--------UCGGGU-CGGAGGAcGCGc -5'
5226 5' -66 NC_001798.1 + 4034 0.68 0.327209
Target:  5'- gGCCGGCCaccgccgcgcgGGCCCGGCggcgCUCCagGCGg- -3'
miRNA:   3'- gCGGCCGG-----------UCGGGUCG----GAGGa-CGCgc -5'
5226 5' -66 NC_001798.1 + 5904 0.66 0.461145
Target:  5'- cCGCCccgaGGCgGGCCCggacggggggcgGGCCguUCCUcGCGCa -3'
miRNA:   3'- -GCGG----CCGgUCGGG------------UCGG--AGGA-CGCGc -5'
5226 5' -66 NC_001798.1 + 11952 0.72 0.195172
Target:  5'- uGCCGcGCCAGaCCCAG-CUCCaGgGCGg -3'
miRNA:   3'- gCGGC-CGGUC-GGGUCgGAGGaCgCGC- -5'
5226 5' -66 NC_001798.1 + 20013 0.66 0.452472
Target:  5'- gGCCGGCCggggagGGCCCccCCUCC-GUGuCGg -3'
miRNA:   3'- gCGGCCGG------UCGGGucGGAGGaCGC-GC- -5'
5226 5' -66 NC_001798.1 + 21032 0.67 0.410502
Target:  5'- aCGaaGGCgGcGCCCGGCCUgCgagaaaGCGCGg -3'
miRNA:   3'- -GCggCCGgU-CGGGUCGGAgGa-----CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.