miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 5' -66 NC_001798.1 + 71731 1.08 0.00044
Target:  5'- gCGCCGGCCAGCCCAGCCUCCUGCGCGa -3'
miRNA:   3'- -GCGGCCGGUCGGGUCGGAGGACGCGC- -5'
5226 5' -66 NC_001798.1 + 87342 0.79 0.059822
Target:  5'- aCGCuCGGCCAGCCCGagcucuuuuucguGCacacgaUCCUGCGCGg -3'
miRNA:   3'- -GCG-GCCGGUCGGGU-------------CGg-----AGGACGCGC- -5'
5226 5' -66 NC_001798.1 + 109355 0.78 0.070511
Target:  5'- uGCUGGCCGGCCUGGCCgCCcggggagcagcgggcUGCGCGg -3'
miRNA:   3'- gCGGCCGGUCGGGUCGGaGG---------------ACGCGC- -5'
5226 5' -66 NC_001798.1 + 61865 0.78 0.0772
Target:  5'- cCGCCGGcCCAGCCCggcGGCCcCCUcggGCGCGc -3'
miRNA:   3'- -GCGGCC-GGUCGGG---UCGGaGGA---CGCGC- -5'
5226 5' -66 NC_001798.1 + 97698 0.77 0.087503
Target:  5'- uCGCUGGCCAGCCUcgGGCgCUgCgUGCGCGa -3'
miRNA:   3'- -GCGGCCGGUCGGG--UCG-GA-GgACGCGC- -5'
5226 5' -66 NC_001798.1 + 35555 0.77 0.087503
Target:  5'- uGCCGGcCCGGCCCGGCC-CCggagcccgcgGCGCu -3'
miRNA:   3'- gCGGCC-GGUCGGGUCGGaGGa---------CGCGc -5'
5226 5' -66 NC_001798.1 + 2986 0.76 0.10942
Target:  5'- gGgCGGCCGGCCCgcgGGCC-CCggGCGCGg -3'
miRNA:   3'- gCgGCCGGUCGGG---UCGGaGGa-CGCGC- -5'
5226 5' -66 NC_001798.1 + 101778 0.75 0.120733
Target:  5'- uGCUGGCguuaacuaaGGCCCGGCCUCC-GCGCc -3'
miRNA:   3'- gCGGCCGg--------UCGGGUCGGAGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 24681 0.75 0.123727
Target:  5'- gGCUGGCCggAGCCCGGCCcgCC-GCGCc -3'
miRNA:   3'- gCGGCCGG--UCGGGUCGGa-GGaCGCGc -5'
5226 5' -66 NC_001798.1 + 75465 0.75 0.124944
Target:  5'- gGCCGGcCCGGCCgCGGCCcugcuggacuucacCCUGCGCa -3'
miRNA:   3'- gCGGCC-GGUCGG-GUCGGa-------------GGACGCGc -5'
5226 5' -66 NC_001798.1 + 113833 0.75 0.12679
Target:  5'- aCGCCGGCCGGUCCucgGGCCUacgUCUGgGUGu -3'
miRNA:   3'- -GCGGCCGGUCGGG---UCGGA---GGACgCGC- -5'
5226 5' -66 NC_001798.1 + 137918 0.74 0.133126
Target:  5'- cCGCCGGgCGGCCCGcGCCUCCcccgGcCGCc -3'
miRNA:   3'- -GCGGCCgGUCGGGU-CGGAGGa---C-GCGc -5'
5226 5' -66 NC_001798.1 + 151266 0.74 0.139415
Target:  5'- gGCCGuGCCGGCCCgcacggccgccucGGCCUCCa-CGCGg -3'
miRNA:   3'- gCGGC-CGGUCGGG-------------UCGGAGGacGCGC- -5'
5226 5' -66 NC_001798.1 + 117524 0.74 0.143179
Target:  5'- gGCUggGGCCGGCCCAGCCccUCCcggucuuuggcUGCGCc -3'
miRNA:   3'- gCGG--CCGGUCGGGUCGG--AGG-----------ACGCGc -5'
5226 5' -66 NC_001798.1 + 25690 0.74 0.146682
Target:  5'- uGCgGGCCcGCCaCGGCCgCCUGgGCGg -3'
miRNA:   3'- gCGgCCGGuCGG-GUCGGaGGACgCGC- -5'
5226 5' -66 NC_001798.1 + 1891 0.74 0.150262
Target:  5'- gCGCCGGCCAGCagccCCAGgaaCUCCacgGCGCc -3'
miRNA:   3'- -GCGGCCGGUCG----GGUCg--GAGGa--CGCGc -5'
5226 5' -66 NC_001798.1 + 34794 0.73 0.161485
Target:  5'- cCGCCGGCgCGGCCCggggccccggGGCC-CCcGCGCu -3'
miRNA:   3'- -GCGGCCG-GUCGGG----------UCGGaGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 93543 0.73 0.16539
Target:  5'- uCGCCGGCgAGCaCCuGGCCaUgCUGUGCGg -3'
miRNA:   3'- -GCGGCCGgUCG-GG-UCGG-AgGACGCGC- -5'
5226 5' -66 NC_001798.1 + 3456 0.73 0.16539
Target:  5'- gGCUGGUCAGCaggaAGcCCUUCUGCGCGc -3'
miRNA:   3'- gCGGCCGGUCGgg--UC-GGAGGACGCGC- -5'
5226 5' -66 NC_001798.1 + 23809 0.72 0.181872
Target:  5'- gGCCcggGGCCGGCCCcccGCCcCCgggGCGCGu -3'
miRNA:   3'- gCGG---CCGGUCGGGu--CGGaGGa--CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.