miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 5' -66 NC_001798.1 + 27947 0.72 0.181872
Target:  5'- gCGCCGGCCGcGcCCCGGCgCUCCagccgUGcCGCGc -3'
miRNA:   3'- -GCGGCCGGU-C-GGGUCG-GAGG-----AC-GCGC- -5'
5226 5' -66 NC_001798.1 + 145501 0.72 0.186214
Target:  5'- cCGcCCGGCCGccgcgcgcccccGCCCGGCCgCC-GCGCGc -3'
miRNA:   3'- -GC-GGCCGGU------------CGGGUCGGaGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 135774 0.72 0.186214
Target:  5'- gGCCGGCCgccGGCCCgccggaggaGGCCgUgUGCGCGg -3'
miRNA:   3'- gCGGCCGG---UCGGG---------UCGGaGgACGCGC- -5'
5226 5' -66 NC_001798.1 + 145417 0.72 0.186214
Target:  5'- cCGcCCGGCCGccgcgcgcccccGCCCGGCCgCC-GCGCGc -3'
miRNA:   3'- -GC-GGCCGGU------------CGGGUCGGaGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 145459 0.72 0.186214
Target:  5'- cCGcCCGGCCGccgcgcgcccccGCCCGGCCgCC-GCGCGc -3'
miRNA:   3'- -GC-GGCCGGU------------CGGGUCGGaGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 76300 0.72 0.190647
Target:  5'- uCGCCa-CCAGCCCccaGGCCaUCCUGCuGCGg -3'
miRNA:   3'- -GCGGccGGUCGGG---UCGG-AGGACG-CGC- -5'
5226 5' -66 NC_001798.1 + 135055 0.72 0.190647
Target:  5'- aGgCGGCCGGCC--GCCUCCUGCcCGc -3'
miRNA:   3'- gCgGCCGGUCGGguCGGAGGACGcGC- -5'
5226 5' -66 NC_001798.1 + 91197 0.72 0.190647
Target:  5'- gCGCUGaGCCGGCCCgagGGCCUUuggCUGCGUu -3'
miRNA:   3'- -GCGGC-CGGUCGGG---UCGGAG---GACGCGc -5'
5226 5' -66 NC_001798.1 + 21698 0.72 0.190647
Target:  5'- cCGCCGcuGCCGuCCCGGUCUCCgccGCGCa -3'
miRNA:   3'- -GCGGC--CGGUcGGGUCGGAGGa--CGCGc -5'
5226 5' -66 NC_001798.1 + 11952 0.72 0.195172
Target:  5'- uGCCGcGCCAGaCCCAG-CUCCaGgGCGg -3'
miRNA:   3'- gCGGC-CGGUC-GGGUCgGAGGaCgCGC- -5'
5226 5' -66 NC_001798.1 + 58826 0.72 0.199791
Target:  5'- uCGUCGGCCAGCaCCAGCagcgCC-GCGUa -3'
miRNA:   3'- -GCGGCCGGUCG-GGUCGga--GGaCGCGc -5'
5226 5' -66 NC_001798.1 + 53453 0.72 0.204505
Target:  5'- gGgCGGCCAGCUgAGCCgcgccaUCCUaGCGCa -3'
miRNA:   3'- gCgGCCGGUCGGgUCGG------AGGA-CGCGc -5'
5226 5' -66 NC_001798.1 + 28077 0.72 0.204505
Target:  5'- gCGCCGGCCGcGUCCucgCUCCUGCgGCGc -3'
miRNA:   3'- -GCGGCCGGU-CGGGucgGAGGACG-CGC- -5'
5226 5' -66 NC_001798.1 + 1504 0.72 0.204505
Target:  5'- gCGCCcgaGGCggCGGCCCGGCCgUCCaGCGCc -3'
miRNA:   3'- -GCGG---CCG--GUCGGGUCGG-AGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 26190 0.71 0.209315
Target:  5'- gCGCUGGaCGGCCgGGCCgccgCCUcggGCGCGg -3'
miRNA:   3'- -GCGGCCgGUCGGgUCGGa---GGA---CGCGC- -5'
5226 5' -66 NC_001798.1 + 111213 0.71 0.214222
Target:  5'- uGCuCGGCCAcgGuCCCGGCCgCCaGCGCGu -3'
miRNA:   3'- gCG-GCCGGU--C-GGGUCGGaGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 89301 0.71 0.214222
Target:  5'- uGCCGGCC--CCCGGUCUCgC-GCGCGa -3'
miRNA:   3'- gCGGCCGGucGGGUCGGAG-GaCGCGC- -5'
5226 5' -66 NC_001798.1 + 71190 0.71 0.219227
Target:  5'- gCGCUGGCCAucuuccGUCCGGCCgucaccggCCUGCuGCa -3'
miRNA:   3'- -GCGGCCGGU------CGGGUCGGa-------GGACG-CGc -5'
5226 5' -66 NC_001798.1 + 95201 0.71 0.224332
Target:  5'- gGCCGGgaaCUGGgCCAGCCUgCUGgGCGg -3'
miRNA:   3'- gCGGCC---GGUCgGGUCGGAgGACgCGC- -5'
5226 5' -66 NC_001798.1 + 24065 0.71 0.224332
Target:  5'- gCGCUGGaCCAGgCCuGCUUCCggaucucggGCGCGg -3'
miRNA:   3'- -GCGGCC-GGUCgGGuCGGAGGa--------CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.