miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 5' -66 NC_001798.1 + 146491 0.66 0.452472
Target:  5'- gGCCgGGCCGGgCCGGCaacgCCccGCGCc -3'
miRNA:   3'- gCGG-CCGGUCgGGUCGga--GGa-CGCGc -5'
5226 5' -66 NC_001798.1 + 147078 0.66 0.452472
Target:  5'- uCGgCGGCC-GCCC--CCUCCgGCGCc -3'
miRNA:   3'- -GCgGCCGGuCGGGucGGAGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 78856 0.66 0.452472
Target:  5'- aCGCCGGCC-GCCUgggGGCgCUCUUugauacucgGCGCc -3'
miRNA:   3'- -GCGGCCGGuCGGG---UCG-GAGGA---------CGCGc -5'
5226 5' -66 NC_001798.1 + 54581 0.66 0.447311
Target:  5'- gGCCGGCCGGCCaCguauuacacgcauauGGCCggg-GCGCc -3'
miRNA:   3'- gCGGCCGGUCGG-G---------------UCGGaggaCGCGc -5'
5226 5' -66 NC_001798.1 + 2483 0.66 0.443889
Target:  5'- gGCgGGCCGGCgggUCAGCg-CCgcgggGCGCGg -3'
miRNA:   3'- gCGgCCGGUCG---GGUCGgaGGa----CGCGC- -5'
5226 5' -66 NC_001798.1 + 150671 0.66 0.443889
Target:  5'- cCGCC-GCCGcggcgucuucGCCCAcCCgcgcgCCUGCGCGc -3'
miRNA:   3'- -GCGGcCGGU----------CGGGUcGGa----GGACGCGC- -5'
5226 5' -66 NC_001798.1 + 102368 0.66 0.443889
Target:  5'- cCGCCGGa-AGCCCAcCCgCCUG-GCGg -3'
miRNA:   3'- -GCGGCCggUCGGGUcGGaGGACgCGC- -5'
5226 5' -66 NC_001798.1 + 91343 0.66 0.443036
Target:  5'- cCGCCGGCUuccccccgggggaAGCCgGGCCgCCcGCgGCa -3'
miRNA:   3'- -GCGGCCGG-------------UCGGgUCGGaGGaCG-CGc -5'
5226 5' -66 NC_001798.1 + 1663 0.66 0.435398
Target:  5'- aGgCGcGCguGCgCGGCCUCCacgcGCGCGa -3'
miRNA:   3'- gCgGC-CGguCGgGUCGGAGGa---CGCGC- -5'
5226 5' -66 NC_001798.1 + 32795 0.66 0.435398
Target:  5'- gCGCCGGCCGGCgacGCC-CCcGCGgGc -3'
miRNA:   3'- -GCGGCCGGUCGgguCGGaGGaCGCgC- -5'
5226 5' -66 NC_001798.1 + 56245 0.66 0.435398
Target:  5'- cCGgCGGCCgGGCCCGGCC-CCggaguuacCGCa -3'
miRNA:   3'- -GCgGCCGG-UCGGGUCGGaGGac------GCGc -5'
5226 5' -66 NC_001798.1 + 69304 0.66 0.435398
Target:  5'- gCGCCGGggaCGG-UCAGcCCUCCcGCGCGc -3'
miRNA:   3'- -GCGGCCg--GUCgGGUC-GGAGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 93061 0.66 0.435398
Target:  5'- gGCCuucgaGGCCAGCCaggguaAGCC-CCagcgggGCGCGc -3'
miRNA:   3'- gCGG-----CCGGUCGGg-----UCGGaGGa-----CGCGC- -5'
5226 5' -66 NC_001798.1 + 66809 0.66 0.427002
Target:  5'- gCGCgGGUCcgucgcggAGCCCGGCCcggugCCgGCGCc -3'
miRNA:   3'- -GCGgCCGG--------UCGGGUCGGa----GGaCGCGc -5'
5226 5' -66 NC_001798.1 + 145557 0.66 0.427002
Target:  5'- gCGUCGcGCCGGCgCCc-CCUCCcgGCGCu -3'
miRNA:   3'- -GCGGC-CGGUCG-GGucGGAGGa-CGCGc -5'
5226 5' -66 NC_001798.1 + 134287 0.66 0.427002
Target:  5'- gGCCGGUgGGCCCucuucGUCcCgCUGCGCc -3'
miRNA:   3'- gCGGCCGgUCGGGu----CGGaG-GACGCGc -5'
5226 5' -66 NC_001798.1 + 151605 0.66 0.427002
Target:  5'- gCGCuCGGCCgggGGCCgGGCCggggGCGUGg -3'
miRNA:   3'- -GCG-GCCGG---UCGGgUCGGaggaCGCGC- -5'
5226 5' -66 NC_001798.1 + 86842 0.66 0.427002
Target:  5'- -cCCGGCCcgGGCCCGGCCgcgacaagacCCgGCgGCGg -3'
miRNA:   3'- gcGGCCGG--UCGGGUCGGa---------GGaCG-CGC- -5'
5226 5' -66 NC_001798.1 + 47816 0.67 0.418703
Target:  5'- uCGCgGGCUcucacGGcCCCGGCC-CC-GCGCGc -3'
miRNA:   3'- -GCGgCCGG-----UC-GGGUCGGaGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 21032 0.67 0.410502
Target:  5'- aCGaaGGCgGcGCCCGGCCUgCgagaaaGCGCGg -3'
miRNA:   3'- -GCggCCGgU-CGGGUCGGAgGa-----CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.