miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 5' -66 NC_001798.1 + 21032 0.67 0.410502
Target:  5'- aCGaaGGCgGcGCCCGGCCUgCgagaaaGCGCGg -3'
miRNA:   3'- -GCggCCGgU-CGGGUCGGAgGa-----CGCGC- -5'
5226 5' -66 NC_001798.1 + 153696 0.67 0.410502
Target:  5'- gGCCGccGCCGGCgCAGgCUCagGCGCGc -3'
miRNA:   3'- gCGGC--CGGUCGgGUCgGAGgaCGCGC- -5'
5226 5' -66 NC_001798.1 + 24490 0.67 0.402402
Target:  5'- gCGCCugagcGCCGcGCCC-GCCUCC-GCGCc -3'
miRNA:   3'- -GCGGc----CGGU-CGGGuCGGAGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 150173 0.67 0.394404
Target:  5'- gGCgGGCCGccGCCC--CCUCCgcgGCGUGg -3'
miRNA:   3'- gCGgCCGGU--CGGGucGGAGGa--CGCGC- -5'
5226 5' -66 NC_001798.1 + 96998 0.67 0.39361
Target:  5'- gGCCagGGCCGGCCCgccgcccgccgauAGCuCUUCUGUccGCGa -3'
miRNA:   3'- gCGG--CCGGUCGGG-------------UCG-GAGGACG--CGC- -5'
5226 5' -66 NC_001798.1 + 122406 0.67 0.39361
Target:  5'- aGCUGGCCacGGCCCugacggaGGCCUgugCCgccgaGCGCGu -3'
miRNA:   3'- gCGGCCGG--UCGGG-------UCGGA---GGa----CGCGC- -5'
5226 5' -66 NC_001798.1 + 109529 0.67 0.386509
Target:  5'- aGCUGGCguucguguuggaCAGCCCcgcGGCCUaugGCGCGg -3'
miRNA:   3'- gCGGCCG------------GUCGGG---UCGGAggaCGCGC- -5'
5226 5' -66 NC_001798.1 + 122088 0.67 0.386509
Target:  5'- uGCUGGCgGGCCUggAGCCgCCcgGCGgGg -3'
miRNA:   3'- gCGGCCGgUCGGG--UCGGaGGa-CGCgC- -5'
5226 5' -66 NC_001798.1 + 58948 0.67 0.386509
Target:  5'- cCGCCGaCCAGCCuCAGCCac--GCGCa -3'
miRNA:   3'- -GCGGCcGGUCGG-GUCGGaggaCGCGc -5'
5226 5' -66 NC_001798.1 + 78038 0.67 0.386509
Target:  5'- aCGCCGaGCCccuGGCgCGGCUg-CUGCGCa -3'
miRNA:   3'- -GCGGC-CGG---UCGgGUCGGagGACGCGc -5'
5226 5' -66 NC_001798.1 + 30429 0.67 0.386509
Target:  5'- aCGCCc-CCGGCCCGGCCcCCggccgaGCGCc -3'
miRNA:   3'- -GCGGccGGUCGGGUCGGaGGa-----CGCGc -5'
5226 5' -66 NC_001798.1 + 127028 0.67 0.386509
Target:  5'- gGCCGGCCGuCCUGGCCgacuuuagCCUG-GUGa -3'
miRNA:   3'- gCGGCCGGUcGGGUCGGa-------GGACgCGC- -5'
5226 5' -66 NC_001798.1 + 1223 0.67 0.37872
Target:  5'- gGCCcgcGGCCGacGCCCAGCgUaUCUGCGgGg -3'
miRNA:   3'- gCGG---CCGGU--CGGGUCGgA-GGACGCgC- -5'
5226 5' -66 NC_001798.1 + 25961 0.67 0.37872
Target:  5'- gCGCUGGCCGGC--GGCgCgggaCCUGCGCc -3'
miRNA:   3'- -GCGGCCGGUCGggUCG-Ga---GGACGCGc -5'
5226 5' -66 NC_001798.1 + 150379 0.67 0.37872
Target:  5'- gGCgGcGCgGGCCCGGCCgcgUCC-GCGCu -3'
miRNA:   3'- gCGgC-CGgUCGGGUCGG---AGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 146599 0.68 0.371036
Target:  5'- cCGCgGcGCCagcGGCCCAcGCCUCCcGcCGCa -3'
miRNA:   3'- -GCGgC-CGG---UCGGGU-CGGAGGaC-GCGc -5'
5226 5' -66 NC_001798.1 + 1196 0.68 0.36346
Target:  5'- cCGCCgcGGCCAGCaCC-GUC-CCcGCGCGg -3'
miRNA:   3'- -GCGG--CCGGUCG-GGuCGGaGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 24728 0.68 0.361208
Target:  5'- gGCgCGGCCGcCCCGccgcacgccgacgcGCCccgCCUGCGCGc -3'
miRNA:   3'- gCG-GCCGGUcGGGU--------------CGGa--GGACGCGC- -5'
5226 5' -66 NC_001798.1 + 70206 0.68 0.355992
Target:  5'- cCGCCGGCC-GCCCucccCCUCgaGCGa- -3'
miRNA:   3'- -GCGGCCGGuCGGGuc--GGAGgaCGCgc -5'
5226 5' -66 NC_001798.1 + 25426 0.68 0.355992
Target:  5'- uCGCUGGCCGcgcgcugcgccGCCCcGCCccCCggcgGCGCGc -3'
miRNA:   3'- -GCGGCCGGU-----------CGGGuCGGa-GGa---CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.