miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 5' -66 NC_001798.1 + 153828 0.68 0.33424
Target:  5'- gGCgCGGCguGCggGGCCUCCgGCGCc -3'
miRNA:   3'- gCG-GCCGguCGggUCGGAGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 153696 0.67 0.410502
Target:  5'- gGCCGccGCCGGCgCAGgCUCagGCGCGc -3'
miRNA:   3'- gCGGC--CGGUCGgGUCgGAGgaCGCGC- -5'
5226 5' -66 NC_001798.1 + 153052 0.66 0.469905
Target:  5'- gGuuGGCCGGCgCC-GCCcCCUGgGgCGg -3'
miRNA:   3'- gCggCCGGUCG-GGuCGGaGGACgC-GC- -5'
5226 5' -66 NC_001798.1 + 151605 0.66 0.427002
Target:  5'- gCGCuCGGCCgggGGCCgGGCCggggGCGUGg -3'
miRNA:   3'- -GCG-GCCGG---UCGGgUCGGaggaCGCGC- -5'
5226 5' -66 NC_001798.1 + 151266 0.74 0.139415
Target:  5'- gGCCGuGCCGGCCCgcacggccgccucGGCCUCCa-CGCGg -3'
miRNA:   3'- gCGGC-CGGUCGGG-------------UCGGAGGacGCGC- -5'
5226 5' -66 NC_001798.1 + 150671 0.66 0.443889
Target:  5'- cCGCC-GCCGcggcgucuucGCCCAcCCgcgcgCCUGCGCGc -3'
miRNA:   3'- -GCGGcCGGU----------CGGGUcGGa----GGACGCGC- -5'
5226 5' -66 NC_001798.1 + 150379 0.67 0.37872
Target:  5'- gGCgGcGCgGGCCCGGCCgcgUCC-GCGCu -3'
miRNA:   3'- gCGgC-CGgUCGGGUCGG---AGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 150282 0.68 0.33424
Target:  5'- gGUCGcGCCuGCCCGGCCcagacUCUGUGCu -3'
miRNA:   3'- gCGGC-CGGuCGGGUCGGa----GGACGCGc -5'
5226 5' -66 NC_001798.1 + 150173 0.67 0.394404
Target:  5'- gGCgGGCCGccGCCC--CCUCCgcgGCGUGg -3'
miRNA:   3'- gCGgCCGGU--CGGGucGGAGGa--CGCGC- -5'
5226 5' -66 NC_001798.1 + 149255 0.69 0.300186
Target:  5'- uCGCCGGCCGGCgCGGgCgcgcCCUGCu-- -3'
miRNA:   3'- -GCGGCCGGUCGgGUCgGa---GGACGcgc -5'
5226 5' -66 NC_001798.1 + 147205 0.69 0.287336
Target:  5'- cCGgCGGuCCGGCCCgGGCCcCCggcggaGCGCGg -3'
miRNA:   3'- -GCgGCC-GGUCGGG-UCGGaGGa-----CGCGC- -5'
5226 5' -66 NC_001798.1 + 147078 0.66 0.452472
Target:  5'- uCGgCGGCC-GCCC--CCUCCgGCGCc -3'
miRNA:   3'- -GCgGCCGGuCGGGucGGAGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 146755 0.7 0.268877
Target:  5'- cCGCCGGagAGCCCgAGCCccgCCcGCGUGu -3'
miRNA:   3'- -GCGGCCggUCGGG-UCGGa--GGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 146599 0.68 0.371036
Target:  5'- cCGCgGcGCCagcGGCCCAcGCCUCCcGcCGCa -3'
miRNA:   3'- -GCGgC-CGG---UCGGGU-CGGAGGaC-GCGc -5'
5226 5' -66 NC_001798.1 + 146491 0.66 0.452472
Target:  5'- gGCCgGGCCGGgCCGGCaacgCCccGCGCc -3'
miRNA:   3'- gCGG-CCGGUCgGGUCGga--GGa-CGCGc -5'
5226 5' -66 NC_001798.1 + 145557 0.66 0.427002
Target:  5'- gCGUCGcGCCGGCgCCc-CCUCCcgGCGCu -3'
miRNA:   3'- -GCGGC-CGGUCG-GGucGGAGGa-CGCGc -5'
5226 5' -66 NC_001798.1 + 145501 0.72 0.186214
Target:  5'- cCGcCCGGCCGccgcgcgcccccGCCCGGCCgCC-GCGCGc -3'
miRNA:   3'- -GC-GGCCGGU------------CGGGUCGGaGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 145459 0.72 0.186214
Target:  5'- cCGcCCGGCCGccgcgcgcccccGCCCGGCCgCC-GCGCGc -3'
miRNA:   3'- -GC-GGCCGGU------------CGGGUCGGaGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 145417 0.72 0.186214
Target:  5'- cCGcCCGGCCGccgcgcgcccccGCCCGGCCgCC-GCGCGc -3'
miRNA:   3'- -GC-GGCCGGU------------CGGGUCGGaGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 138995 0.66 0.469905
Target:  5'- cCGCuCGGCCAcCCCGGCgauaucgccCUCCcGgGCGu -3'
miRNA:   3'- -GCG-GCCGGUcGGGUCG---------GAGGaCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.