miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 3' -56.3 NC_001798.1 + 88030 0.66 0.888273
Target:  5'- -cGCUUGGcCGGGgagggCAGGgccgcuggGggGGCGGg -3'
miRNA:   3'- aaUGGACC-GCCCa----GUCCa-------CuaUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 93119 0.71 0.606794
Target:  5'- -gGCCcggcgGGCGGGUUugAgcagcgccuggccucGGUGAUGGCGGg -3'
miRNA:   3'- aaUGGa----CCGCCCAG--U---------------CCACUAUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 96027 0.66 0.881329
Target:  5'- -cACC-GGCGGGgCGGGcg--GGCGGg -3'
miRNA:   3'- aaUGGaCCGCCCaGUCCacuaUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 101880 0.66 0.894989
Target:  5'- -gGCgUGuGCGGGggaGGGcUGAugUAGCGGg -3'
miRNA:   3'- aaUGgAC-CGCCCag-UCC-ACU--AUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 102015 0.75 0.419185
Target:  5'- -gGCCuUGGCGGGguagCgGGGUGGUugGGCGGg -3'
miRNA:   3'- aaUGG-ACCGCCCa---G-UCCACUA--UCGCC- -5'
5230 3' -56.3 NC_001798.1 + 107383 0.7 0.674406
Target:  5'- gUACCUGcaGCGcGG-CGGGaGGUGGCGGg -3'
miRNA:   3'- aAUGGAC--CGC-CCaGUCCaCUAUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 124499 0.66 0.894989
Target:  5'- -cGCCaUGGCGGGggGGGggcu-GCGGg -3'
miRNA:   3'- aaUGG-ACCGCCCagUCCacuauCGCC- -5'
5230 3' -56.3 NC_001798.1 + 144072 0.68 0.782396
Target:  5'- -cGCCUGGcCGGGau-GGUGGUA-CGGg -3'
miRNA:   3'- aaUGGACC-GCCCaguCCACUAUcGCC- -5'
5230 3' -56.3 NC_001798.1 + 146092 0.71 0.606794
Target:  5'- -gGCgaGGCGGG-CgggcgaaggaaggggGGGUGGUGGCGGc -3'
miRNA:   3'- aaUGgaCCGCCCaG---------------UCCACUAUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 148033 0.71 0.6027
Target:  5'- cUACCgcgugggcgcgGGCGGGgggguGGUGGUAGUGGu -3'
miRNA:   3'- aAUGGa----------CCGCCCagu--CCACUAUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 148284 0.79 0.242832
Target:  5'- -gGCgUGGCGGG-CAGGUGugcgGGCGGg -3'
miRNA:   3'- aaUGgACCGCCCaGUCCACua--UCGCC- -5'
5230 3' -56.3 NC_001798.1 + 148391 0.79 0.242832
Target:  5'- -gGCgUGGCGGG-CAGGUGugcgGGCGGg -3'
miRNA:   3'- aaUGgACCGCCCaGUCCACua--UCGCC- -5'
5230 3' -56.3 NC_001798.1 + 149165 0.66 0.888273
Target:  5'- -cGCCUcGGCcgguGGUCcGGUGGggGGCGGc -3'
miRNA:   3'- aaUGGA-CCGc---CCAGuCCACUa-UCGCC- -5'
5230 3' -56.3 NC_001798.1 + 150841 0.66 0.881329
Target:  5'- -cGCCagggGGCGccGGUCGGGUcgcGGCGGg -3'
miRNA:   3'- aaUGGa---CCGC--CCAGUCCAcuaUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.