miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 5' -64.9 NC_001798.1 + 150319 0.67 0.489295
Target:  5'- -uCGGUCugAGCCUgggUCauGCGCGaCCGGGg -3'
miRNA:   3'- cuGCCAG--UCGGG---AGggCGCGC-GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 15050 0.67 0.480421
Target:  5'- gGGCGGaUgGGCCCggg-GCGCGCgGGGg -3'
miRNA:   3'- -CUGCC-AgUCGGGagggCGCGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 58878 0.67 0.480421
Target:  5'- --gGGUCccgGGCCCggaaCCCccggagGCGCGCCGGc -3'
miRNA:   3'- cugCCAG---UCGGGa---GGG------CGCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 75347 0.67 0.480421
Target:  5'- uGCGGUC-GCCgUaCCCgGCGCacCCGGGg -3'
miRNA:   3'- cUGCCAGuCGGgA-GGG-CGCGc-GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 111724 0.67 0.480421
Target:  5'- uGACGGU-GGCCCgcuuggccCCCGCGCccCCGGc -3'
miRNA:   3'- -CUGCCAgUCGGGa-------GGGCGCGc-GGCCc -5'
5230 5' -64.9 NC_001798.1 + 4103 0.67 0.480421
Target:  5'- gGGCGGgcUCGGCCCUgggCGgGCucgGCCGGGg -3'
miRNA:   3'- -CUGCC--AGUCGGGAgg-GCgCG---CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 95012 0.67 0.480421
Target:  5'- gGGCGGcgCGGgCCUggaggccggggCCCGCGCGCUGauGGa -3'
miRNA:   3'- -CUGCCa-GUCgGGA-----------GGGCGCGCGGC--CC- -5'
5230 5' -64.9 NC_001798.1 + 151281 0.67 0.471626
Target:  5'- cACGGccgccUCGG-CCUCCaCGCGgGuCCGGGg -3'
miRNA:   3'- cUGCC-----AGUCgGGAGG-GCGCgC-GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 105294 0.67 0.462913
Target:  5'- cGCGGUCuccAGCgCCUCCaGgGCGUCGGc -3'
miRNA:   3'- cUGCCAG---UCG-GGAGGgCgCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 33126 0.67 0.462913
Target:  5'- uGAUG--CAGCUCcCCCGCGCagggggGCCGGGg -3'
miRNA:   3'- -CUGCcaGUCGGGaGGGCGCG------CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 47671 0.67 0.462913
Target:  5'- cGCGGcgCuGGCCCgaugCgCGCGCGCCcgaGGGg -3'
miRNA:   3'- cUGCCa-G-UCGGGa---GgGCGCGCGG---CCC- -5'
5230 5' -64.9 NC_001798.1 + 93262 0.67 0.462913
Target:  5'- aACGcccgCGGCCCgcgCCgGCGcCGUCGGGg -3'
miRNA:   3'- cUGCca--GUCGGGa--GGgCGC-GCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 135770 0.67 0.462913
Target:  5'- cGGCGGcCGGCCg-CCgGCcCGCCGGa -3'
miRNA:   3'- -CUGCCaGUCGGgaGGgCGcGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 43338 0.67 0.454285
Target:  5'- gGGCGG-CAgugccGCCC-CCCGCGuCGuccCCGGGg -3'
miRNA:   3'- -CUGCCaGU-----CGGGaGGGCGC-GC---GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 43008 0.67 0.454285
Target:  5'- cGACGGcCAGgCCgCCCGgggggaGCGCgGGGc -3'
miRNA:   3'- -CUGCCaGUCgGGaGGGCg-----CGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 96897 0.68 0.445745
Target:  5'- cGACGGUaccuGCCC-CaCGC-CGCCGGGc -3'
miRNA:   3'- -CUGCCAgu--CGGGaGgGCGcGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 27455 0.68 0.437296
Target:  5'- uGCGGcaCAGCCUgcuaguccccgUCCUGcCGCGCgGGGg -3'
miRNA:   3'- cUGCCa-GUCGGG-----------AGGGC-GCGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 87997 0.68 0.437296
Target:  5'- gGGgGGUCGGCaugcgacggcgUCUCCCggggGCGCuugGCCGGGg -3'
miRNA:   3'- -CUgCCAGUCG-----------GGAGGG----CGCG---CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 150678 0.68 0.437296
Target:  5'- cGCGGcgUCuucGCCCaCCCGCGCGCCu-- -3'
miRNA:   3'- cUGCC--AGu--CGGGaGGGCGCGCGGccc -5'
5230 5' -64.9 NC_001798.1 + 71596 0.68 0.436456
Target:  5'- aGGCGGUCGGCCUgucgggcggcgUCCUcagccagacgcugGCGCGCaucauGGGc -3'
miRNA:   3'- -CUGCCAGUCGGG-----------AGGG-------------CGCGCGg----CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.