miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 5' -64.9 NC_001798.1 + 23815 0.67 0.507268
Target:  5'- --gGGcCGGCCC-CCCGCcC-CCGGGg -3'
miRNA:   3'- cugCCaGUCGGGaGGGCGcGcGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 24021 0.66 0.553332
Target:  5'- cGAUGGggUGGCUCcagaaCCCGCGCGuggcgcCCGGGg -3'
miRNA:   3'- -CUGCCa-GUCGGGa----GGGCGCGC------GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 24687 0.69 0.358201
Target:  5'- -cCGGagccCGGCCCgccgcgccCCCGCGC-CCGGGg -3'
miRNA:   3'- cuGCCa---GUCGGGa-------GGGCGCGcGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 24887 0.66 0.553332
Target:  5'- -cUGGUCgccggGGCCCUgggCCCgGCGCuGCCGcGGa -3'
miRNA:   3'- cuGCCAG-----UCGGGA---GGG-CGCG-CGGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 25387 0.67 0.507268
Target:  5'- uGGCGccCGGCCCUcauguucgacCCgCGCGCGCUGGc -3'
miRNA:   3'- -CUGCcaGUCGGGA----------GG-GCGCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 25458 0.7 0.320535
Target:  5'- cGGCGGcgcgcccgccgccuUCGGCCCg-CUGCGCGCCucGGGc -3'
miRNA:   3'- -CUGCC--------------AGUCGGGagGGCGCGCGG--CCC- -5'
5230 5' -64.9 NC_001798.1 + 25781 0.66 0.51636
Target:  5'- cGCGGgaccUGGCCUUCgCCG-GCGCCGuGGa -3'
miRNA:   3'- cUGCCa---GUCGGGAG-GGCgCGCGGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 27039 0.73 0.221552
Target:  5'- gGGCGGgCGGCacguCUCCCGCGCccGCgGGGg -3'
miRNA:   3'- -CUGCCaGUCGg---GAGGGCGCG--CGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 27260 0.69 0.350862
Target:  5'- cGCGGgaccgCAGCCCcgUgGCGCGCgGGGg -3'
miRNA:   3'- cUGCCa----GUCGGGagGgCGCGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 27455 0.68 0.437296
Target:  5'- uGCGGcaCAGCCUgcuaguccccgUCCUGcCGCGCgGGGg -3'
miRNA:   3'- cUGCCa-GUCGGG-----------AGGGC-GCGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 27527 0.72 0.242606
Target:  5'- cGCGGgaaggCAGCCC-CgCgGCGCGCgGGGg -3'
miRNA:   3'- cUGCCa----GUCGGGaG-GgCGCGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 28356 0.7 0.343631
Target:  5'- cGGCGG-CGGCCC-CCCGCGUccccGcCCGcGGa -3'
miRNA:   3'- -CUGCCaGUCGGGaGGGCGCG----C-GGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 28993 0.69 0.396481
Target:  5'- gGGCGGcgcCGGCCaa-CCGCGCGCCGc- -3'
miRNA:   3'- -CUGCCa--GUCGGgagGGCGCGCGGCcc -5'
5230 5' -64.9 NC_001798.1 + 29974 0.66 0.562704
Target:  5'- aGCGGUCGGgggaCC-CCCGUGgGCCGu- -3'
miRNA:   3'- cUGCCAGUCg---GGaGGGCGCgCGGCcc -5'
5230 5' -64.9 NC_001798.1 + 30823 0.66 0.534733
Target:  5'- cGCGGaCGGCCCcgcgcUCCC-UGuCGCUGGGg -3'
miRNA:   3'- cUGCCaGUCGGG-----AGGGcGC-GCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 31664 0.69 0.350862
Target:  5'- cGCGGcCgGGCCCgcgccgCCCGcCGUGCCGGu -3'
miRNA:   3'- cUGCCaG-UCGGGa-----GGGC-GCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 31876 0.66 0.553332
Target:  5'- gGGCGG-CGGCCCgCCCccggaagaggcGCGgGUCGGa -3'
miRNA:   3'- -CUGCCaGUCGGGaGGG-----------CGCgCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 33126 0.67 0.462913
Target:  5'- uGAUG--CAGCUCcCCCGCGCagggggGCCGGGg -3'
miRNA:   3'- -CUGCcaGUCGGGaGGGCGCG------CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 34112 0.66 0.534733
Target:  5'- gGGCGGUgggcguacgGGCCCgaCCCGCGCcugcccccCCGGGa -3'
miRNA:   3'- -CUGCCAg--------UCGGGa-GGGCGCGc-------GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 34797 0.71 0.26766
Target:  5'- -cCGGcgCGGCCCggggccccggggccCCCGCGCuccGCCGGGg -3'
miRNA:   3'- cuGCCa-GUCGGGa-------------GGGCGCG---CGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.