miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 5' -64.9 NC_001798.1 + 151 0.74 0.171562
Target:  5'- cGCGGgcgCcGCCCcucccCCCGCGCGCCGcGGg -3'
miRNA:   3'- cUGCCa--GuCGGGa----GGGCGCGCGGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 420 0.78 0.093646
Target:  5'- cGCGG-CAGCCCcuccccCCCGCGCGCCacGGGg -3'
miRNA:   3'- cUGCCaGUCGGGa-----GGGCGCGCGG--CCC- -5'
5230 5' -64.9 NC_001798.1 + 637 0.69 0.365647
Target:  5'- --aGGUCAGagccccagaCCC-CCCGCGgGCgCGGGa -3'
miRNA:   3'- cugCCAGUC---------GGGaGGGCGCgCG-GCCC- -5'
5230 5' -64.9 NC_001798.1 + 1200 0.69 0.388616
Target:  5'- cGCGGcCAGCaCCgucCCCGCGCGgcCCGcGGc -3'
miRNA:   3'- cUGCCaGUCG-GGa--GGGCGCGC--GGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 1442 0.69 0.348682
Target:  5'- cGCGGUgCGagugcGCCUcguccucgcagaagUCCgGCGCGCCGGGc -3'
miRNA:   3'- cUGCCA-GU-----CGGG--------------AGGgCGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 1511 0.77 0.10592
Target:  5'- aGGCGG-CGGCCCggCCGUccaGCGCCGGGa -3'
miRNA:   3'- -CUGCCaGUCGGGagGGCG---CGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 1728 0.71 0.277276
Target:  5'- cACGGUgCGGCgCaggUCCCGCGCcGCCGGc -3'
miRNA:   3'- cUGCCA-GUCGgG---AGGGCGCG-CGGCCc -5'
5230 5' -64.9 NC_001798.1 + 2448 0.71 0.289682
Target:  5'- uGGCGGcgcCAGCCgC-CCUGCGgGUCGGGg -3'
miRNA:   3'- -CUGCCa--GUCGG-GaGGGCGCgCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 2779 0.66 0.51636
Target:  5'- cGGCGGagcUCAGCaggcgcgggCUCCgCGgcaGCGCCGGGc -3'
miRNA:   3'- -CUGCC---AGUCGg--------GAGG-GCg--CGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 2986 0.78 0.098385
Target:  5'- gGGCGGcCGGCCCgcgggcCCCGgGCGCgGGGg -3'
miRNA:   3'- -CUGCCaGUCGGGa-----GGGCgCGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 3121 0.76 0.131894
Target:  5'- cACGGccacgCGGCCCgccUCCGCGCGCCGGc -3'
miRNA:   3'- cUGCCa----GUCGGGa--GGGCGCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 3404 0.75 0.156033
Target:  5'- -cCGGUCAGCgCCgcguUCUCGCGCGCCagcaGGGg -3'
miRNA:   3'- cuGCCAGUCG-GG----AGGGCGCGCGG----CCC- -5'
5230 5' -64.9 NC_001798.1 + 3455 0.68 0.428109
Target:  5'- aGGCuGGUCagcaggaAGCCCUUCUGCGCG-CGGu -3'
miRNA:   3'- -CUG-CCAG-------UCGGGAGGGCGCGCgGCCc -5'
5230 5' -64.9 NC_001798.1 + 3508 0.66 0.553332
Target:  5'- cACGG-CGGCCg-CCaCGUGCGCCaGGc -3'
miRNA:   3'- cUGCCaGUCGGgaGG-GCGCGCGGcCC- -5'
5230 5' -64.9 NC_001798.1 + 4103 0.67 0.480421
Target:  5'- gGGCGGgcUCGGCCCUgggCGgGCucgGCCGGGg -3'
miRNA:   3'- -CUGCC--AGUCGGGAgg-GCgCG---CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 9149 0.69 0.350862
Target:  5'- cGCGGgcgCGGCgCCg-CC-CGCGCCGGGg -3'
miRNA:   3'- cUGCCa--GUCG-GGagGGcGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 15050 0.67 0.480421
Target:  5'- gGGCGGaUgGGCCCggg-GCGCGCgGGGg -3'
miRNA:   3'- -CUGCC-AgUCGGGagggCGCGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 16201 0.67 0.498245
Target:  5'- cACGGgccGCCCUCCgcaCGCGCcGCCuguGGGg -3'
miRNA:   3'- cUGCCaguCGGGAGG---GCGCG-CGG---CCC- -5'
5230 5' -64.9 NC_001798.1 + 20348 0.69 0.358201
Target:  5'- aGGCGGUUGGCgCUgCCGgGCGgguUCGGGg -3'
miRNA:   3'- -CUGCCAGUCGgGAgGGCgCGC---GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 22863 0.67 0.489295
Target:  5'- gGACcGUC-GCCC-CgCCGCGCGgcCCGGGu -3'
miRNA:   3'- -CUGcCAGuCGGGaG-GGCGCGC--GGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.