miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 5' -64.9 NC_001798.1 + 69311 1.08 0.000671
Target:  5'- gGACGGUCAGCCCUCCCGCGCGCCGGGc -3'
miRNA:   3'- -CUGCCAGUCGGGAGGGCGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 153403 0.81 0.061271
Target:  5'- cGCGGUCGGCCCgCUCGCGCGCCcaGGa -3'
miRNA:   3'- cUGCCAGUCGGGaGGGCGCGCGGc-CC- -5'
5230 5' -64.9 NC_001798.1 + 86874 0.79 0.084809
Target:  5'- cGGCGGUCGcGCUUUUCCGC-CGCCGGGa -3'
miRNA:   3'- -CUGCCAGU-CGGGAGGGCGcGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 61186 0.79 0.086941
Target:  5'- aGAUGGUCGGCCUgcaCCggCGCGCGCCGGcGg -3'
miRNA:   3'- -CUGCCAGUCGGGa--GG--GCGCGCGGCC-C- -5'
5230 5' -64.9 NC_001798.1 + 420 0.78 0.093646
Target:  5'- cGCGG-CAGCCCcuccccCCCGCGCGCCacGGGg -3'
miRNA:   3'- cUGCCaGUCGGGa-----GGGCGCGCGG--CCC- -5'
5230 5' -64.9 NC_001798.1 + 2986 0.78 0.098385
Target:  5'- gGGCGGcCGGCCCgcgggcCCCGgGCGCgGGGg -3'
miRNA:   3'- -CUGCCaGUCGGGa-----GGGCgCGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 1511 0.77 0.10592
Target:  5'- aGGCGG-CGGCCCggCCGUccaGCGCCGGGa -3'
miRNA:   3'- -CUGCCaGUCGGGagGGCG---CGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 51752 0.77 0.116811
Target:  5'- cGGCGGgcaaaaacCAGcCCCUCCCGCGCGauGGGu -3'
miRNA:   3'- -CUGCCa-------GUC-GGGAGGGCGCGCggCCC- -5'
5230 5' -64.9 NC_001798.1 + 3121 0.76 0.131894
Target:  5'- cACGGccacgCGGCCCgccUCCGCGCGCCGGc -3'
miRNA:   3'- cUGCCa----GUCGGGa--GGGCGCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 3404 0.75 0.156033
Target:  5'- -cCGGUCAGCgCCgcguUCUCGCGCGCCagcaGGGg -3'
miRNA:   3'- cuGCCAGUCG-GG----AGGGCGCGCGG----CCC- -5'
5230 5' -64.9 NC_001798.1 + 151 0.74 0.171562
Target:  5'- cGCGGgcgCcGCCCcucccCCCGCGCGCCGcGGg -3'
miRNA:   3'- cUGCCa--GuCGGGa----GGGCGCGCGGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 154489 0.74 0.171562
Target:  5'- cGCGGgcgCcGCCCcucccCCCGCGCGCCGcGGg -3'
miRNA:   3'- cUGCCa--GuCGGGa----GGGCGCGCGGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 152200 0.74 0.175655
Target:  5'- cGGgGGUC-GCCCUCUCacCGUGCCGGGg -3'
miRNA:   3'- -CUgCCAGuCGGGAGGGc-GCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 98602 0.74 0.179834
Target:  5'- cGGCGGccccggCGGCCC-CCCGCGCcUCGGGc -3'
miRNA:   3'- -CUGCCa-----GUCGGGaGGGCGCGcGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 134289 0.74 0.179834
Target:  5'- -cCGGUgGGCCCucuucgUCCCGCuGCGCCuGGGc -3'
miRNA:   3'- cuGCCAgUCGGG------AGGGCG-CGCGG-CCC- -5'
5230 5' -64.9 NC_001798.1 + 43149 0.74 0.192904
Target:  5'- cGCGGgccCAGUCgUCCCGCGCcGCCGcGGc -3'
miRNA:   3'- cUGCCa--GUCGGgAGGGCGCG-CGGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 147206 0.73 0.202074
Target:  5'- cGGCGGUcCGGCCCgggccCCCGgcggaGCGCgGGGg -3'
miRNA:   3'- -CUGCCA-GUCGGGa----GGGCg----CGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 102176 0.73 0.206799
Target:  5'- uGAUGGUUucguggGGCCCggaagCCUggcgcgcgGCGCGCCGGGa -3'
miRNA:   3'- -CUGCCAG------UCGGGa----GGG--------CGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 38457 0.73 0.206799
Target:  5'- gGugGGUCAucGCCCUCCucccaCGCGCacGCCGGc -3'
miRNA:   3'- -CugCCAGU--CGGGAGG-----GCGCG--CGGCCc -5'
5230 5' -64.9 NC_001798.1 + 27039 0.73 0.221552
Target:  5'- gGGCGGgCGGCacguCUCCCGCGCccGCgGGGg -3'
miRNA:   3'- -CUGCCaGUCGg---GAGGGCGCG--CGgCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.