miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5232 3' -59.5 NC_001798.1 + 68338 1.06 0.001863
Target:  5'- gACACCCAGCUCUGCGAAGGCGGCGUAu -3'
miRNA:   3'- -UGUGGGUCGAGACGCUUCCGCCGCAU- -5'
5232 3' -59.5 NC_001798.1 + 1234 0.81 0.110224
Target:  5'- gACGCCCAGCguaUCUGCGggGGCGGg--- -3'
miRNA:   3'- -UGUGGGUCG---AGACGCuuCCGCCgcau -5'
5232 3' -59.5 NC_001798.1 + 59670 0.75 0.240127
Target:  5'- gGCgACUCGGCUCgcGUGggGGCGGCGg- -3'
miRNA:   3'- -UG-UGGGUCGAGa-CGCuuCCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 28339 0.74 0.2967
Target:  5'- cGCGCCUgAGC-CUGCGccGGCGGCGg- -3'
miRNA:   3'- -UGUGGG-UCGaGACGCuuCCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 71578 0.74 0.306378
Target:  5'- cGCACgggCGGCUCUGUGAggcggucggccugucGGGCGGCGUc -3'
miRNA:   3'- -UGUGg--GUCGAGACGCU---------------UCCGCCGCAu -5'
5232 3' -59.5 NC_001798.1 + 139335 0.74 0.3106
Target:  5'- gGCGCCCGcgcgcGCUgUGCGGccauGGCGGCGUc -3'
miRNA:   3'- -UGUGGGU-----CGAgACGCUu---CCGCCGCAu -5'
5232 3' -59.5 NC_001798.1 + 45078 0.73 0.332367
Target:  5'- gACACCCGGCgcCUcGUGAAGGCGcGCGc- -3'
miRNA:   3'- -UGUGGGUCGa-GA-CGCUUCCGC-CGCau -5'
5232 3' -59.5 NC_001798.1 + 58121 0.73 0.347489
Target:  5'- -gGCCCGGCgUCuggguccuUGUGAAGGCGGCGc- -3'
miRNA:   3'- ugUGGGUCG-AG--------ACGCUUCCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 31139 0.73 0.355233
Target:  5'- aGCGcCCCGGC---GCGggGGCGGCGg- -3'
miRNA:   3'- -UGU-GGGUCGagaCGCuuCCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 2231 0.72 0.371083
Target:  5'- gGCGCgCAGCgg-GcCGAAGGCGGCGg- -3'
miRNA:   3'- -UGUGgGUCGagaC-GCUUCCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 136628 0.72 0.387407
Target:  5'- aACGCagAGCUCUGCG-GGGUGGCGc- -3'
miRNA:   3'- -UGUGggUCGAGACGCuUCCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 101812 0.72 0.404198
Target:  5'- gGCGCCUcggguugggguaAGCUCgcgGCGggGGgaGGCGUGg -3'
miRNA:   3'- -UGUGGG------------UCGAGa--CGCuuCCg-CCGCAU- -5'
5232 3' -59.5 NC_001798.1 + 27375 0.71 0.439119
Target:  5'- aACugUCuGgUCUGCGAGGGCGaGCGg- -3'
miRNA:   3'- -UGugGGuCgAGACGCUUCCGC-CGCau -5'
5232 3' -59.5 NC_001798.1 + 11962 0.71 0.448116
Target:  5'- -gACCCAGCUCcaggGCGGauAGGCGGgGc- -3'
miRNA:   3'- ugUGGGUCGAGa---CGCU--UCCGCCgCau -5'
5232 3' -59.5 NC_001798.1 + 29644 0.71 0.448116
Target:  5'- cGCAcCCCGGCaCUGCGAgcgacGGaGCGGCGg- -3'
miRNA:   3'- -UGU-GGGUCGaGACGCU-----UC-CGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 105379 0.71 0.457214
Target:  5'- -aGCUCGGCggcCUG-GAGGGCGGCGUu -3'
miRNA:   3'- ugUGGGUCGa--GACgCUUCCGCCGCAu -5'
5232 3' -59.5 NC_001798.1 + 21040 0.71 0.457214
Target:  5'- gGCGCCCGGC-CUGCGAgaaAGcGCGGaUGUu -3'
miRNA:   3'- -UGUGGGUCGaGACGCU---UC-CGCC-GCAu -5'
5232 3' -59.5 NC_001798.1 + 26358 0.7 0.485082
Target:  5'- -gGCCCGGCggagCUGCGcGGGCcgcGGCGg- -3'
miRNA:   3'- ugUGGGUCGa---GACGCuUCCG---CCGCau -5'
5232 3' -59.5 NC_001798.1 + 30918 0.7 0.494551
Target:  5'- -gACCUGGC-CgacgGUGAGGGCGGCGg- -3'
miRNA:   3'- ugUGGGUCGaGa---CGCUUCCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 153783 0.7 0.494551
Target:  5'- -gGCCCGcGCUCcuugcGCGgcGGCGGCGg- -3'
miRNA:   3'- ugUGGGU-CGAGa----CGCuuCCGCCGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.