miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5232 3' -59.5 NC_001798.1 + 1234 0.81 0.110224
Target:  5'- gACGCCCAGCguaUCUGCGggGGCGGg--- -3'
miRNA:   3'- -UGUGGGUCG---AGACGCuuCCGCCgcau -5'
5232 3' -59.5 NC_001798.1 + 1479 0.66 0.733579
Target:  5'- cGCGCCgGGCgccaugGCGucgcccgcgcccGAGGCGGCGg- -3'
miRNA:   3'- -UGUGGgUCGaga---CGC------------UUCCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 2231 0.72 0.371083
Target:  5'- gGCGCgCAGCgg-GcCGAAGGCGGCGg- -3'
miRNA:   3'- -UGUGgGUCGagaC-GCUUCCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 2499 0.66 0.733579
Target:  5'- aGCGCCgcggggcgCGGCggCcGCGgcGGCGGCGUc -3'
miRNA:   3'- -UGUGG--------GUCGa-GaCGCuuCCGCCGCAu -5'
5232 3' -59.5 NC_001798.1 + 3196 0.67 0.663936
Target:  5'- gGC-CCCGGC-CggcGCGGAGGCgGGCGc- -3'
miRNA:   3'- -UGuGGGUCGaGa--CGCUUCCG-CCGCau -5'
5232 3' -59.5 NC_001798.1 + 4195 0.7 0.498363
Target:  5'- cCGCCCgcGGCguggUCUGCGGcgcuggcgggggcgcGGGCGGCGUc -3'
miRNA:   3'- uGUGGG--UCG----AGACGCU---------------UCCGCCGCAu -5'
5232 3' -59.5 NC_001798.1 + 5370 0.68 0.613254
Target:  5'- gACGCCCGcGCgUCcGCGuccguGGCGGCGg- -3'
miRNA:   3'- -UGUGGGU-CG-AGaCGCuu---CCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 9968 0.66 0.71398
Target:  5'- aACAgCCGGCguaCUGCGGaccgccAGGCGGUa-- -3'
miRNA:   3'- -UGUgGGUCGa--GACGCU------UCCGCCGcau -5'
5232 3' -59.5 NC_001798.1 + 11962 0.71 0.448116
Target:  5'- -gACCCAGCUCcaggGCGGauAGGCGGgGc- -3'
miRNA:   3'- ugUGGGUCGAGa---CGCU--UCCGCCgCau -5'
5232 3' -59.5 NC_001798.1 + 12699 0.69 0.552957
Target:  5'- -gGCCCGGg-UUGCuGggGGCGGCGg- -3'
miRNA:   3'- ugUGGGUCgaGACG-CuuCCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 18765 0.67 0.653818
Target:  5'- -aGCCCGGCUCUGUGGAGuuuucugcuuCGGCa-- -3'
miRNA:   3'- ugUGGGUCGAGACGCUUCc---------GCCGcau -5'
5232 3' -59.5 NC_001798.1 + 21040 0.71 0.457214
Target:  5'- gGCGCCCGGC-CUGCGAgaaAGcGCGGaUGUu -3'
miRNA:   3'- -UGUGGGUCGaGACGCU---UC-CGCC-GCAu -5'
5232 3' -59.5 NC_001798.1 + 23948 0.66 0.752832
Target:  5'- gGCGCCgAGCUggGCGAc-GCGGCGc- -3'
miRNA:   3'- -UGUGGgUCGAgaCGCUucCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 24569 0.68 0.633538
Target:  5'- gGCGgCCGGCgc-GCGGAGGCGggccGCGUGg -3'
miRNA:   3'- -UGUgGGUCGagaCGCUUCCGC----CGCAU- -5'
5232 3' -59.5 NC_001798.1 + 25489 0.66 0.704073
Target:  5'- cGCGCCUcgGGCccgCUGCGccGcGCGGCGg- -3'
miRNA:   3'- -UGUGGG--UCGa--GACGCuuC-CGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 26234 0.69 0.543058
Target:  5'- gGCGCCCGGCgcgccggacuUCUGCGAGGacgaGGCGc- -3'
miRNA:   3'- -UGUGGGUCG----------AGACGCUUCcg--CCGCau -5'
5232 3' -59.5 NC_001798.1 + 26358 0.7 0.485082
Target:  5'- -gGCCCGGCggagCUGCGcGGGCcgcGGCGg- -3'
miRNA:   3'- ugUGGGUCGa---GACGCuUCCG---CCGCau -5'
5232 3' -59.5 NC_001798.1 + 27375 0.71 0.439119
Target:  5'- aACugUCuGgUCUGCGAGGGCGaGCGg- -3'
miRNA:   3'- -UGugGGuCgAGACGCUUCCGC-CGCau -5'
5232 3' -59.5 NC_001798.1 + 28339 0.74 0.2967
Target:  5'- cGCGCCUgAGC-CUGCGccGGCGGCGg- -3'
miRNA:   3'- -UGUGGG-UCGaGACGCuuCCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 29644 0.71 0.448116
Target:  5'- cGCAcCCCGGCaCUGCGAgcgacGGaGCGGCGg- -3'
miRNA:   3'- -UGU-GGGUCGaGACGCU-----UC-CGCCGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.