miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5232 5' -63.1 NC_001798.1 + 25243 0.67 0.566582
Target:  5'- --gAGGGCcCCgaCCCGCAGGgcggCUGGCg -3'
miRNA:   3'- ccaUCCCGcGG--GGGCGUCUa---GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 25723 0.66 0.595531
Target:  5'- uGGaccGGCGCCCCCGac-GUCuCGGCg -3'
miRNA:   3'- -CCaucCCGCGGGGGCgucUAG-GCCGa -5'
5232 5' -63.1 NC_001798.1 + 26461 0.72 0.30112
Target:  5'- ---cGGGCccGCCCCCGCAGAUacgcugggcgUCGGCc -3'
miRNA:   3'- ccauCCCG--CGGGGGCGUCUA----------GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 26545 0.7 0.357774
Target:  5'- uGGUGGGGa-CCgCCGCGGggCUGGCc -3'
miRNA:   3'- -CCAUCCCgcGGgGGCGUCuaGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 27556 0.74 0.199435
Target:  5'- gGGaGGGGCGgCgCCCGCGGGggagcggCCGGCUc -3'
miRNA:   3'- -CCaUCCCGCgG-GGGCGUCUa------GGCCGA- -5'
5232 5' -63.1 NC_001798.1 + 29515 0.67 0.528589
Target:  5'- aGGgGGGGauucccucccucCGCCCCCGCcggGGcgCgCGGCUa -3'
miRNA:   3'- -CCaUCCC------------GCGGGGGCG---UCuaG-GCCGA- -5'
5232 5' -63.1 NC_001798.1 + 29844 0.67 0.557008
Target:  5'- cGGUgagAGGGCGaCCCC-CGGGUCUcaGGCc -3'
miRNA:   3'- -CCA---UCCCGCgGGGGcGUCUAGG--CCGa -5'
5232 5' -63.1 NC_001798.1 + 29976 0.69 0.447086
Target:  5'- cGGUcGGGgGaCCCCCGUGGG-CCGuGCg -3'
miRNA:   3'- -CCAuCCCgC-GGGGGCGUCUaGGC-CGa -5'
5232 5' -63.1 NC_001798.1 + 31275 0.67 0.528589
Target:  5'- gGGUcugGGGGCGgCCCUGCc-GUCgCGGCc -3'
miRNA:   3'- -CCA---UCCCGCgGGGGCGucUAG-GCCGa -5'
5232 5' -63.1 NC_001798.1 + 32248 0.69 0.421491
Target:  5'- uGGUGGGaGCGUCgcgUCCGCG--UCCGGCg -3'
miRNA:   3'- -CCAUCC-CGCGG---GGGCGUcuAGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 32361 0.66 0.605238
Target:  5'- cGG-AGGGCGgCCCCGagccCGGGgcccgcgacCCGGCg -3'
miRNA:   3'- -CCaUCCCGCgGGGGC----GUCUa--------GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 32777 0.73 0.234893
Target:  5'- cGGgagcAGGGCGCgCCCGCGccggCCGGCg -3'
miRNA:   3'- -CCa---UCCCGCGgGGGCGUcua-GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 35321 0.67 0.547481
Target:  5'- cGGgcacGGCGCCCgcaaCCGCAGAgcacucagCUGGCg -3'
miRNA:   3'- -CCauc-CCGCGGG----GGCGUCUa-------GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 35812 0.66 0.576198
Target:  5'- gGGgggGGGGCGUCgggaCUCGCGGAgggCCGGa- -3'
miRNA:   3'- -CCa--UCCCGCGG----GGGCGUCUa--GGCCga -5'
5232 5' -63.1 NC_001798.1 + 39602 0.67 0.566582
Target:  5'- uGGUuguGGGCGUUUCUGgAGAcgcgCCGGCg -3'
miRNA:   3'- -CCAu--CCCGCGGGGGCgUCUa---GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 43083 0.67 0.532349
Target:  5'- cGGgcucGGGCGCCgCCGCcgcguccgcgaccacGGucgcuUCCGGCg -3'
miRNA:   3'- -CCau--CCCGCGGgGGCG---------------UCu----AGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 44624 0.7 0.373057
Target:  5'- cGGU-GGGCGCgCCCGUGGggCCauugGGCg -3'
miRNA:   3'- -CCAuCCCGCGgGGGCGUCuaGG----CCGa -5'
5232 5' -63.1 NC_001798.1 + 46318 0.66 0.614962
Target:  5'- aGgcGGGCGCCUCgugcaCGCAGucgCCGuGCUc -3'
miRNA:   3'- cCauCCCGCGGGG-----GCGUCua-GGC-CGA- -5'
5232 5' -63.1 NC_001798.1 + 47523 0.66 0.624698
Target:  5'- ---cGGGCGUCCCCGguGucUCCGa-- -3'
miRNA:   3'- ccauCCCGCGGGGGCguCu-AGGCcga -5'
5232 5' -63.1 NC_001798.1 + 47927 0.66 0.613989
Target:  5'- --cGGGGCGCCUaaggccuCCGCGaccCCGGCg -3'
miRNA:   3'- ccaUCCCGCGGG-------GGCGUcuaGGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.