miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5232 5' -63.1 NC_001798.1 + 197 0.71 0.307807
Target:  5'- ---cGGGCGCCCCCGCG----CGGCUu -3'
miRNA:   3'- ccauCCCGCGGGGGCGUcuagGCCGA- -5'
5232 5' -63.1 NC_001798.1 + 1444 0.67 0.528589
Target:  5'- cGGUgcgAGuGCGCCucgucCUCGCAGAagUCCGGCg -3'
miRNA:   3'- -CCA---UCcCGCGG-----GGGCGUCU--AGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 1730 0.66 0.576198
Target:  5'- cGGUGcGGCGCagguCCCGCGccgCCGGCc -3'
miRNA:   3'- -CCAUcCCGCGg---GGGCGUcuaGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 2096 0.67 0.554145
Target:  5'- cGGggGGGGCccGCCCCCGgcgcggcccgcggcCAGGUccucgcCCGGCa -3'
miRNA:   3'- -CCa-UCCCG--CGGGGGC--------------GUCUA------GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 2469 0.7 0.388777
Target:  5'- gGGUcGGGGC-CCUCgGCGGG-CCGGCg -3'
miRNA:   3'- -CCA-UCCCGcGGGGgCGUCUaGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 2538 0.7 0.357774
Target:  5'- gGGgcggGGGGCgcgGCCCCCGCGGGaggggCGGCc -3'
miRNA:   3'- -CCa---UCCCG---CGGGGGCGUCUag---GCCGa -5'
5232 5' -63.1 NC_001798.1 + 2609 0.69 0.447086
Target:  5'- gGGgcgcGGGGCGCCgCCCGgCGGcgCCcuGGCc -3'
miRNA:   3'- -CCa---UCCCGCGG-GGGC-GUCuaGG--CCGa -5'
5232 5' -63.1 NC_001798.1 + 2981 0.67 0.547481
Target:  5'- cGGcGGGGCgGCCggCCCGCGGGcCCcgGGCg -3'
miRNA:   3'- -CCaUCCCG-CGG--GGGCGUCUaGG--CCGa -5'
5232 5' -63.1 NC_001798.1 + 3238 0.7 0.372282
Target:  5'- --cAGGGCGgcgagcaCCCCCGCGGcgccguagCCGGCg -3'
miRNA:   3'- ccaUCCCGC-------GGGGGCGUCua------GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 3834 0.72 0.275495
Target:  5'- ---cGGGCGCCCCC-CAGAggCCGGg- -3'
miRNA:   3'- ccauCCCGCGGGGGcGUCUa-GGCCga -5'
5232 5' -63.1 NC_001798.1 + 9151 0.67 0.528589
Target:  5'- cGGgcGcGGCGCCgCCCGCgccggggggcaGGGUCUcuGGCg -3'
miRNA:   3'- -CCauC-CCGCGG-GGGCG-----------UCUAGG--CCGa -5'
5232 5' -63.1 NC_001798.1 + 9525 0.66 0.595531
Target:  5'- aGUGGGGC-CCgUCGCcGAggcCCGGCUu -3'
miRNA:   3'- cCAUCCCGcGGgGGCGuCUa--GGCCGA- -5'
5232 5' -63.1 NC_001798.1 + 15213 0.66 0.585849
Target:  5'- cGG-GGGGaGCgUCCGCGGGUCCGuGUg -3'
miRNA:   3'- -CCaUCCCgCGgGGGCGUCUAGGC-CGa -5'
5232 5' -63.1 NC_001798.1 + 15264 0.66 0.580054
Target:  5'- gGGUAcGGGCgguGCCCCggguuccgggcguggCGguGGUCgCGGCg -3'
miRNA:   3'- -CCAU-CCCG---CGGGG---------------GCguCUAG-GCCGa -5'
5232 5' -63.1 NC_001798.1 + 15387 0.69 0.447086
Target:  5'- cGGcGGaGGCGCCCaCCggacccgggguuGCGGGUCCGGg- -3'
miRNA:   3'- -CCaUC-CCGCGGG-GG------------CGUCUAGGCCga -5'
5232 5' -63.1 NC_001798.1 + 17932 0.66 0.584883
Target:  5'- --cGGGGUgaaccccgugGCCCCCaccuuacccguucGCAGGUCCGGaCg -3'
miRNA:   3'- ccaUCCCG----------CGGGGG-------------CGUCUAGGCC-Ga -5'
5232 5' -63.1 NC_001798.1 + 20273 0.68 0.482509
Target:  5'- --aGGcGGCcccacgugcgcgGCCCCagGCGGGUCCGGCa -3'
miRNA:   3'- ccaUC-CCG------------CGGGGg-CGUCUAGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 23713 0.67 0.528589
Target:  5'- cGGccGGGCgGCCCCgGCGGGU-CGaGCUg -3'
miRNA:   3'- -CCauCCCG-CGGGGgCGUCUAgGC-CGA- -5'
5232 5' -63.1 NC_001798.1 + 23926 0.67 0.538007
Target:  5'- ---cGGGCGCCCCgGCgcccgugugGGcgCCGaGCUg -3'
miRNA:   3'- ccauCCCGCGGGGgCG---------UCuaGGC-CGA- -5'
5232 5' -63.1 NC_001798.1 + 24485 0.67 0.547481
Target:  5'- -cUGGGGCGCCugagcgccgcgCCCGCcuccGcgCCGGCc -3'
miRNA:   3'- ccAUCCCGCGG-----------GGGCGu---CuaGGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.