miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5232 5' -63.1 NC_001798.1 + 68379 1.09 0.000656
Target:  5'- cGGUAGGGCGCCCCCGCAGAUCCGGCUg -3'
miRNA:   3'- -CCAUCCCGCGGGGGCGUCUAGGCCGA- -5'
5232 5' -63.1 NC_001798.1 + 135001 0.76 0.168731
Target:  5'- cGGUGGGcGCcagggucguccuGCCCCCGCGGGcauggCCGGCc -3'
miRNA:   3'- -CCAUCC-CG------------CGGGGGCGUCUa----GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 134612 0.75 0.181336
Target:  5'- aGG-AGGGCGCCUUCGCGGAcCUGGUc -3'
miRNA:   3'- -CCaUCCCGCGGGGGCGUCUaGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 27556 0.74 0.199435
Target:  5'- gGGaGGGGCGgCgCCCGCGGGggagcggCCGGCUc -3'
miRNA:   3'- -CCaUCCCGCgG-GGGCGUCUa------GGCCGA- -5'
5232 5' -63.1 NC_001798.1 + 143295 0.74 0.219088
Target:  5'- cGUAGGGgccgucCGCCCCCgGCGGGUcgCCGGCc -3'
miRNA:   3'- cCAUCCC------GCGGGGG-CGUCUA--GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 71404 0.73 0.234893
Target:  5'- uGGUggcgGGGGUGCCCgCGCGGAcgccccCCGGCc -3'
miRNA:   3'- -CCA----UCCCGCGGGgGCGUCUa-----GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 32777 0.73 0.234893
Target:  5'- cGGgagcAGGGCGCgCCCGCGccggCCGGCg -3'
miRNA:   3'- -CCa---UCCCGCGgGGGCGUcua-GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 54613 0.73 0.245954
Target:  5'- --cGGGGCGCCCCCGCGccUCCcGCc -3'
miRNA:   3'- ccaUCCCGCGGGGGCGUcuAGGcCGa -5'
5232 5' -63.1 NC_001798.1 + 59830 0.73 0.256858
Target:  5'- -cUGGGGCGCCgcggucgCCCGCG--UCCGGCUc -3'
miRNA:   3'- ccAUCCCGCGG-------GGGCGUcuAGGCCGA- -5'
5232 5' -63.1 NC_001798.1 + 59752 0.73 0.257443
Target:  5'- --cGGGGUGCCUCCGCuuGGUucCCGGCg -3'
miRNA:   3'- ccaUCCCGCGGGGGCGu-CUA--GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 3834 0.72 0.275495
Target:  5'- ---cGGGCGCCCCC-CAGAggCCGGg- -3'
miRNA:   3'- ccauCCCGCGGGGGcGUCUa-GGCCga -5'
5232 5' -63.1 NC_001798.1 + 102073 0.72 0.281734
Target:  5'- uGGUAGGGC-CCCaCCgGCGGAUaCGGCc -3'
miRNA:   3'- -CCAUCCCGcGGG-GG-CGUCUAgGCCGa -5'
5232 5' -63.1 NC_001798.1 + 98584 0.72 0.294546
Target:  5'- cGGUGGcgucGGCgGCCCCgGCGGccCCGGCg -3'
miRNA:   3'- -CCAUC----CCG-CGGGGgCGUCuaGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 26461 0.72 0.30112
Target:  5'- ---cGGGCccGCCCCCGCAGAUacgcugggcgUCGGCc -3'
miRNA:   3'- ccauCCCG--CGGGGGCGUCUA----------GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 122364 0.71 0.305789
Target:  5'- cGUGGGGCGggcgacgcgcccgcCCCCCGCGGcuguccUCCGaGCUg -3'
miRNA:   3'- cCAUCCCGC--------------GGGGGCGUCu-----AGGC-CGA- -5'
5232 5' -63.1 NC_001798.1 + 154535 0.71 0.307807
Target:  5'- ---cGGGCGCCCCCGCG----CGGCUu -3'
miRNA:   3'- ccauCCCGCGGGGGCGUcuagGCCGA- -5'
5232 5' -63.1 NC_001798.1 + 197 0.71 0.307807
Target:  5'- ---cGGGCGCCCCCGCG----CGGCUu -3'
miRNA:   3'- ccauCCCGCGGGGGCGUcuagGCCGA- -5'
5232 5' -63.1 NC_001798.1 + 147184 0.71 0.32152
Target:  5'- cGGgcGgaaGGCGuCCCCCGCccggcGGUCCGGCc -3'
miRNA:   3'- -CCauC---CCGC-GGGGGCGu----CUAGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 106067 0.71 0.328545
Target:  5'- gGGaGGGGgGCCUuuGCGG-UCUGGCg -3'
miRNA:   3'- -CCaUCCCgCGGGggCGUCuAGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 2538 0.7 0.357774
Target:  5'- gGGgcggGGGGCgcgGCCCCCGCGGGaggggCGGCc -3'
miRNA:   3'- -CCa---UCCCG---CGGGGGCGUCUag---GCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.