miRNA display CGI


Results 61 - 80 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 77217 0.66 0.870848
Target:  5'- -uGGACGCgGCCGuGCgGGCGcauggCGCCc -3'
miRNA:   3'- uuCCUGCG-UGGC-CGgCUGCuua--GUGG- -5'
5234 3' -56.6 NC_001798.1 + 82825 0.66 0.870848
Target:  5'- -cGGAacCGCAUUGccccccGCCGACGAAcCACCc -3'
miRNA:   3'- uuCCU--GCGUGGC------CGGCUGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 108940 0.66 0.870848
Target:  5'- cGGGACaGCccuCCGGCCGA--GAUCAUa -3'
miRNA:   3'- uUCCUG-CGu--GGCCGGCUgcUUAGUGg -5'
5234 3' -56.6 NC_001798.1 + 116420 0.66 0.870848
Target:  5'- cAGGccCGCG-CGGCCGACGc--CGCCg -3'
miRNA:   3'- uUCCu-GCGUgGCCGGCUGCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 3013 0.66 0.86865
Target:  5'- cGGGGGCGCgGCgGGCCGGgcuccggccagcccCGGcacggccgccagGUCGCCg -3'
miRNA:   3'- -UUCCUGCG-UGgCCGGCU--------------GCU------------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 114696 0.67 0.863448
Target:  5'- cAGGGuuGC-CCGGgCGACccuGGUCGCCg -3'
miRNA:   3'- -UUCCugCGuGGCCgGCUGc--UUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 34848 0.67 0.863448
Target:  5'- -cGGAC-CGCCGGgCGGgGGA-CGCCu -3'
miRNA:   3'- uuCCUGcGUGGCCgGCUgCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 73726 0.67 0.863448
Target:  5'- -cGGGCGCGgcacacaugauuCCGGCCG-CGcuaccUCACCc -3'
miRNA:   3'- uuCCUGCGU------------GGCCGGCuGCuu---AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 87289 0.67 0.863448
Target:  5'- -uGGuCGUGCUGGCCGACcgccacagCACCc -3'
miRNA:   3'- uuCCuGCGUGGCCGGCUGcuua----GUGG- -5'
5234 3' -56.6 NC_001798.1 + 141589 0.67 0.863448
Target:  5'- -cGGcACGCGaCGGCCGGCG--UgGCCg -3'
miRNA:   3'- uuCC-UGCGUgGCCGGCUGCuuAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 113623 0.67 0.855842
Target:  5'- uGGGAauCGCcuGCgCGGCCGGCGc--CGCCa -3'
miRNA:   3'- uUCCU--GCG--UG-GCCGGCUGCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 78682 0.67 0.855842
Target:  5'- cAGG-CGCGCuCGG-UGGCGGAgaUCGCCg -3'
miRNA:   3'- uUCCuGCGUG-GCCgGCUGCUU--AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 97597 0.67 0.855842
Target:  5'- cAGGGGCGCAggGGCCGgagagcugggGCGAcAUCGCg -3'
miRNA:   3'- -UUCCUGCGUggCCGGC----------UGCU-UAGUGg -5'
5234 3' -56.6 NC_001798.1 + 149979 0.67 0.855842
Target:  5'- cGGGGGCGCGgCGcCCG-CGGA-CGCCg -3'
miRNA:   3'- -UUCCUGCGUgGCcGGCuGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 23580 0.67 0.855071
Target:  5'- gGGGcGGCGCcCCGGCCGAgcccgcccagggcCGAGccCGCCc -3'
miRNA:   3'- -UUC-CUGCGuGGCCGGCU-------------GCUUa-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 116847 0.67 0.848037
Target:  5'- cGGGGCGCugCacGCCGGCGug-CugCu -3'
miRNA:   3'- uUCCUGCGugGc-CGGCUGCuuaGugG- -5'
5234 3' -56.6 NC_001798.1 + 131278 0.67 0.848037
Target:  5'- --cGACGCAgaUGGCCGAgaCGAugaacGUCGCCa -3'
miRNA:   3'- uucCUGCGUg-GCCGGCU--GCU-----UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 75657 0.67 0.848037
Target:  5'- cAGGGACGUuauUCGGgaGACGGA-CGCCu -3'
miRNA:   3'- -UUCCUGCGu--GGCCggCUGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 24583 0.67 0.848037
Target:  5'- gGAGG-CGgGCCgcguGGCCGugGAGU-GCCu -3'
miRNA:   3'- -UUCCuGCgUGG----CCGGCugCUUAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 134368 0.67 0.846453
Target:  5'- uGGGGCcCGCCGGCCGcuccucgCGCCg -3'
miRNA:   3'- uUCCUGcGUGGCCGGCugcuua-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.