miRNA display CGI


Results 41 - 60 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 28384 0.67 0.831856
Target:  5'- -cGGACGCGCCGcGCgGGaaGGUaCGCCu -3'
miRNA:   3'- uuCCUGCGUGGC-CGgCUgcUUA-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 28677 0.68 0.806264
Target:  5'- --cGugGCGgCGGCCGAgGcGGUCAUCg -3'
miRNA:   3'- uucCugCGUgGCCGGCUgC-UUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 28782 0.67 0.831856
Target:  5'- gGAGGAgGCGgCGG-CGGCGGcgCGCg -3'
miRNA:   3'- -UUCCUgCGUgGCCgGCUGCUuaGUGg -5'
5234 3' -56.6 NC_001798.1 + 28860 0.72 0.560984
Target:  5'- cGAGGGCgGCcUCGGCCGGCGGA--GCCc -3'
miRNA:   3'- -UUCCUG-CGuGGCCGGCUGCUUagUGG- -5'
5234 3' -56.6 NC_001798.1 + 28990 0.73 0.521535
Target:  5'- aGGGGGCgGCGCCGGCCaACcGcgCGCCg -3'
miRNA:   3'- -UUCCUG-CGUGGCCGGcUGcUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 29380 0.7 0.702251
Target:  5'- cGGGGGCgggcaccacucaGgGCCGcGCCGGCGGggCGCCg -3'
miRNA:   3'- -UUCCUG------------CgUGGC-CGGCUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 30908 0.68 0.797412
Target:  5'- cGAGGACGaugACCuGGCCGACGGugagggCGgCg -3'
miRNA:   3'- -UUCCUGCg--UGG-CCGGCUGCUua----GUgG- -5'
5234 3' -56.6 NC_001798.1 + 31344 0.73 0.541139
Target:  5'- gGGGGGCGCGCgcaGGCgCGGCGggUgggcgaagaCGCCg -3'
miRNA:   3'- -UUCCUGCGUGg--CCG-GCUGCuuA---------GUGG- -5'
5234 3' -56.6 NC_001798.1 + 31570 0.71 0.662056
Target:  5'- cGGGGCGCGCCGcgcGCCcccgcGCGGccGUCGCCc -3'
miRNA:   3'- uUCCUGCGUGGC---CGGc----UGCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 32783 0.8 0.206483
Target:  5'- cAGGGCGCgcccgcGCCGGCCGGCGA--CGCCc -3'
miRNA:   3'- uUCCUGCG------UGGCCGGCUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 32880 0.7 0.692268
Target:  5'- -cGGAC-CACCGGCCGAgG---CGCCu -3'
miRNA:   3'- uuCCUGcGUGGCCGGCUgCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 33286 0.69 0.770007
Target:  5'- -uGGGCGgGCUGGCUGGCGggUa--- -3'
miRNA:   3'- uuCCUGCgUGGCCGGCUGCuuAgugg -5'
5234 3' -56.6 NC_001798.1 + 33404 0.66 0.907053
Target:  5'- gGAGGGCGC-CUGGCuCGGgGAgggaggaggggggggGUCAgCCg -3'
miRNA:   3'- -UUCCUGCGuGGCCG-GCUgCU---------------UAGU-GG- -5'
5234 3' -56.6 NC_001798.1 + 34118 0.68 0.823494
Target:  5'- -uGGGCGUACgGGcCCGACccg-CGCCu -3'
miRNA:   3'- uuCCUGCGUGgCC-GGCUGcuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 34848 0.67 0.863448
Target:  5'- -cGGAC-CGCCGGgCGGgGGA-CGCCu -3'
miRNA:   3'- uuCCUGcGUGGCCgGCUgCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 34989 0.66 0.878038
Target:  5'- -cGGGgGCcccuCCGGCCGG-GGcgCACCu -3'
miRNA:   3'- uuCCUgCGu---GGCCGGCUgCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 35142 0.76 0.369413
Target:  5'- gAAGGGCGCGCCGGUgcGCGGAgcaGCCu -3'
miRNA:   3'- -UUCCUGCGUGGCCGgcUGCUUag-UGG- -5'
5234 3' -56.6 NC_001798.1 + 35390 0.76 0.385701
Target:  5'- gAAGGGCGUgggGCCGGCCGcCGGAU-GCCc -3'
miRNA:   3'- -UUCCUGCG---UGGCCGGCuGCUUAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 36110 0.7 0.702251
Target:  5'- gGGGGGgGC-CCGGCUG-CGucUCGCCg -3'
miRNA:   3'- -UUCCUgCGuGGCCGGCuGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 36333 0.66 0.898295
Target:  5'- cGGGGCuCGCUGGuCCGcCGAaguaaagaaaagAUCGCCa -3'
miRNA:   3'- uUCCUGcGUGGCC-GGCuGCU------------UAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.