miRNA display CGI


Results 21 - 40 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 16193 0.75 0.419665
Target:  5'- gGGGGACGCACgGGCCGcccucCGcAcgCGCCg -3'
miRNA:   3'- -UUCCUGCGUGgCCGGCu----GC-UuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 17260 0.66 0.870848
Target:  5'- cAAGGACGCGgugUGGaCGGCGGucucaaagAUCACCa -3'
miRNA:   3'- -UUCCUGCGUg--GCCgGCUGCU--------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 19492 0.67 0.84004
Target:  5'- -cGGGCcccCGCUGGCCGuuggcgACGAGUgGCCu -3'
miRNA:   3'- uuCCUGc--GUGGCCGGC------UGCUUAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 19989 0.68 0.794727
Target:  5'- -cGGACGCGgauuccggguucucCCGGCCGGCcggGGAggGCCc -3'
miRNA:   3'- uuCCUGCGU--------------GGCCGGCUG---CUUagUGG- -5'
5234 3' -56.6 NC_001798.1 + 21035 0.66 0.891765
Target:  5'- aAGGcGGCGC-CCGGCCuGCGAGaaagCGCg -3'
miRNA:   3'- -UUC-CUGCGuGGCCGGcUGCUUa---GUGg -5'
5234 3' -56.6 NC_001798.1 + 22340 0.66 0.904596
Target:  5'- -cGGACGCGCgGGCgucggGGCGGG--GCCg -3'
miRNA:   3'- uuCCUGCGUGgCCGg----CUGCUUagUGG- -5'
5234 3' -56.6 NC_001798.1 + 22935 0.66 0.891765
Target:  5'- --cGACGCcgccgccgauGCCGuGCCGACGAGgcgGCCc -3'
miRNA:   3'- uucCUGCG----------UGGC-CGGCUGCUUag-UGG- -5'
5234 3' -56.6 NC_001798.1 + 23261 0.68 0.814961
Target:  5'- cGGGGCGUACCcggaccccauGGCCaGCcuGUCGCCg -3'
miRNA:   3'- uUCCUGCGUGG----------CCGGcUGcuUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 23580 0.67 0.855071
Target:  5'- gGGGcGGCGCcCCGGCCGAgcccgcccagggcCGAGccCGCCc -3'
miRNA:   3'- -UUC-CUGCGuGGCCGGCU-------------GCUUa-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 23667 0.66 0.903976
Target:  5'- cGGGcccGCGCggcggugGCCGGCCG-CGA--CGCCa -3'
miRNA:   3'- uUCC---UGCG-------UGGCCGGCuGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 23897 0.66 0.898295
Target:  5'- gGAGGAgGCGCgGGCCcgguuCGAGgccucgggCGCCc -3'
miRNA:   3'- -UUCCUgCGUGgCCGGcu---GCUUa-------GUGG- -5'
5234 3' -56.6 NC_001798.1 + 24417 0.78 0.295236
Target:  5'- cGGcGGCGuCGCCGGCCGACGAG-CGCg -3'
miRNA:   3'- uUC-CUGC-GUGGCCGGCUGCUUaGUGg -5'
5234 3' -56.6 NC_001798.1 + 24562 0.68 0.797412
Target:  5'- -uGGugGCGgCGGCCGGCG---CGCg -3'
miRNA:   3'- uuCCugCGUgGCCGGCUGCuuaGUGg -5'
5234 3' -56.6 NC_001798.1 + 24583 0.67 0.848037
Target:  5'- gGAGG-CGgGCCgcguGGCCGugGAGU-GCCu -3'
miRNA:   3'- -UUCCuGCgUGG----CCGGCugCUUAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 24826 0.69 0.740549
Target:  5'- cGGGGACcuGCGCgUGGCCGGCGGcagcgaggccgccGUgGCCg -3'
miRNA:   3'- -UUCCUG--CGUG-GCCGGCUGCU-------------UAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 24980 0.66 0.870848
Target:  5'- aGAGccuGCGCccccuGCUGGCCGACaccGUCGCCg -3'
miRNA:   3'- -UUCc--UGCG-----UGGCCGGCUGcu-UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 25086 0.73 0.541139
Target:  5'- cAGGGCGcCGCCGGgCGGCGccccgCGCCc -3'
miRNA:   3'- uUCCUGC-GUGGCCgGCUGCuua--GUGG- -5'
5234 3' -56.6 NC_001798.1 + 25817 0.66 0.891765
Target:  5'- uGGGGC-UGCUGGCCGGCGccugcGAcCGCCg -3'
miRNA:   3'- uUCCUGcGUGGCCGGCUGC-----UUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 25959 0.66 0.885012
Target:  5'- ----gUGCGCUGGCCGGCGGcgCgggACCu -3'
miRNA:   3'- uuccuGCGUGGCCGGCUGCUuaG---UGG- -5'
5234 3' -56.6 NC_001798.1 + 28070 0.72 0.551034
Target:  5'- cGAGaGCGCGCCGGCCG-CGuccUCGCUc -3'
miRNA:   3'- -UUCcUGCGUGGCCGGCuGCuu-AGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.