miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 1476 0.66 0.870848
Target:  5'- --cGGCGCGCCGGgCGccAUGGcGUCGCCc -3'
miRNA:   3'- uucCUGCGUGGCCgGC--UGCU-UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 2129 0.68 0.796518
Target:  5'- cAGGuccuCGC-CCGGCagCGGCGAguagaggAUCACCa -3'
miRNA:   3'- uUCCu---GCGuGGCCG--GCUGCU-------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 2228 0.66 0.891765
Target:  5'- cGAGGcGCGCAgCgGGCCGaaggcgGCGGGcgCGCCg -3'
miRNA:   3'- -UUCC-UGCGU-GgCCGGC------UGCUUa-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 2414 0.66 0.889763
Target:  5'- cGAGGGCGCcggcguguggcuggGCCccggcGGCUGGCGg--CGCCa -3'
miRNA:   3'- -UUCCUGCG--------------UGG-----CCGGCUGCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 2473 0.7 0.692268
Target:  5'- cGGGGCcCucgGCgGGCCGGCGggUCAgCg -3'
miRNA:   3'- uUCCUGcG---UGgCCGGCUGCuuAGUgG- -5'
5234 3' -56.6 NC_001798.1 + 2506 0.71 0.611334
Target:  5'- cGGGGCGCGgCGGCCGcgGCGGcggcGUCGgCg -3'
miRNA:   3'- uUCCUGCGUgGCCGGC--UGCU----UAGUgG- -5'
5234 3' -56.6 NC_001798.1 + 2607 0.68 0.806264
Target:  5'- gGGGGGCGCggggcGCCGcCCGGCGg--CGCCc -3'
miRNA:   3'- -UUCCUGCG-----UGGCcGGCUGCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 2964 0.68 0.779275
Target:  5'- cGGGGCGCGUCGGCgugCGGCGGGgcgGCCg -3'
miRNA:   3'- uUCCUGCGUGGCCG---GCUGCUUag-UGG- -5'
5234 3' -56.6 NC_001798.1 + 3013 0.66 0.86865
Target:  5'- cGGGGGCGCgGCgGGCCGGgcuccggccagcccCGGcacggccgccagGUCGCCg -3'
miRNA:   3'- -UUCCUGCG-UGgCCGGCU--------------GCU------------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 3142 0.7 0.672161
Target:  5'- ---cGCGCGCCGGCCGcCGc--CACCa -3'
miRNA:   3'- uuccUGCGUGGCCGGCuGCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 3273 0.71 0.631629
Target:  5'- cGGGcaccGCGCGCucguCGGCCGGCGAcgcCGCCg -3'
miRNA:   3'- uUCC----UGCGUG----GCCGGCUGCUua-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 3433 0.66 0.885012
Target:  5'- cAGGGGCGCGuaGGCgCGGCGcaggcuGGUCAgCa -3'
miRNA:   3'- -UUCCUGCGUggCCG-GCUGC------UUAGUgG- -5'
5234 3' -56.6 NC_001798.1 + 3834 0.68 0.823494
Target:  5'- -cGGGCGCcCCccagaGGCCGggGCGGcuGUCGCCc -3'
miRNA:   3'- uuCCUGCGuGG-----CCGGC--UGCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 4101 0.66 0.870848
Target:  5'- cGGGGCGgGCuCGGCCcugGGCGGGcUCgGCCg -3'
miRNA:   3'- uUCCUGCgUG-GCCGG---CUGCUU-AG-UGG- -5'
5234 3' -56.6 NC_001798.1 + 4367 0.7 0.712177
Target:  5'- gGGGGGCGCGCCGG-CGGCGGu----- -3'
miRNA:   3'- -UUCCUGCGUGGCCgGCUGCUuagugg -5'
5234 3' -56.6 NC_001798.1 + 5927 0.69 0.730843
Target:  5'- gGGGGcgggccguuccucGCGCACauaaagGGCCGGCGucccGGUCGCCg -3'
miRNA:   3'- -UUCC-------------UGCGUGg-----CCGGCUGC----UUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 6364 0.66 0.898295
Target:  5'- gGGGGACGgGCCggggGGCCGGggggcCGGGggGCCg -3'
miRNA:   3'- -UUCCUGCgUGG----CCGGCU-----GCUUagUGG- -5'
5234 3' -56.6 NC_001798.1 + 8792 0.66 0.878038
Target:  5'- cGGGACGgGCgaGGCCG-CGGGguaaagcggCACCg -3'
miRNA:   3'- uUCCUGCgUGg-CCGGCuGCUUa--------GUGG- -5'
5234 3' -56.6 NC_001798.1 + 8833 0.66 0.897652
Target:  5'- -uGGaACGCACCgagucuuGGUCGGCGGgccgggagGUCAUCg -3'
miRNA:   3'- uuCC-UGCGUGG-------CCGGCUGCU--------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 12279 0.68 0.823494
Target:  5'- -cGGugGCGCagacccacaGGCCca-GGAUCGCCa -3'
miRNA:   3'- uuCCugCGUGg--------CCGGcugCUUAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.