miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 67739 1.08 0.002949
Target:  5'- aAAGGACGCACCGGCCGACGAAUCACCc -3'
miRNA:   3'- -UUCCUGCGUGGCCGGCUGCUUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 107400 0.83 0.149178
Target:  5'- gGAGGugGCgggaggacugggGCCGGCUGACGGggGUCGCCg -3'
miRNA:   3'- -UUCCugCG------------UGGCCGGCUGCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 149247 0.81 0.177974
Target:  5'- cGGGGGCGuCGCCGGCCGGCGcgggcgCGCCc -3'
miRNA:   3'- -UUCCUGC-GUGGCCGGCUGCuua---GUGG- -5'
5234 3' -56.6 NC_001798.1 + 32783 0.8 0.206483
Target:  5'- cAGGGCGCgcccgcGCCGGCCGGCGA--CGCCc -3'
miRNA:   3'- uUCCUGCG------UGGCCGGCUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 67791 0.8 0.23318
Target:  5'- cAGGACaGCACCGGCCGACaGGAaCGCa -3'
miRNA:   3'- uUCCUG-CGUGGCCGGCUG-CUUaGUGg -5'
5234 3' -56.6 NC_001798.1 + 78565 0.78 0.268984
Target:  5'- cGGGAgGCGCUGGCCGcgcGCGAG-CGCCg -3'
miRNA:   3'- uUCCUgCGUGGCCGGC---UGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 83676 0.78 0.275366
Target:  5'- uGGGAUGCACUGGCgGGCGGGacgguggcUCGCCc -3'
miRNA:   3'- uUCCUGCGUGGCCGgCUGCUU--------AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 24417 0.78 0.295236
Target:  5'- cGGcGGCGuCGCCGGCCGACGAG-CGCg -3'
miRNA:   3'- uUC-CUGC-GUGGCCGGCUGCUUaGUGg -5'
5234 3' -56.6 NC_001798.1 + 114869 0.77 0.330056
Target:  5'- -cGGGCG-GCCGGUCGACGGggugcugGUCACCa -3'
miRNA:   3'- uuCCUGCgUGGCCGGCUGCU-------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 132214 0.77 0.337523
Target:  5'- gGAGG-CGCGCCuGGCCGGCGGagauaacGUCugCa -3'
miRNA:   3'- -UUCCuGCGUGG-CCGGCUGCU-------UAGugG- -5'
5234 3' -56.6 NC_001798.1 + 78233 0.77 0.345879
Target:  5'- -uGGACGCcauCCgGGCCGACGug-CACCg -3'
miRNA:   3'- uuCCUGCGu--GG-CCGGCUGCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 35142 0.76 0.369413
Target:  5'- gAAGGGCGCGCCGGUgcGCGGAgcaGCCu -3'
miRNA:   3'- -UUCCUGCGUGGCCGgcUGCUUag-UGG- -5'
5234 3' -56.6 NC_001798.1 + 35390 0.76 0.385701
Target:  5'- gAAGGGCGUgggGCCGGCCGcCGGAU-GCCc -3'
miRNA:   3'- -UUCCUGCG---UGGCCGGCuGCUUAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 133022 0.75 0.411004
Target:  5'- -cGGAcguCGCGCCGGCCGAgGuGGUCGCg -3'
miRNA:   3'- uuCCU---GCGUGGCCGGCUgC-UUAGUGg -5'
5234 3' -56.6 NC_001798.1 + 116450 0.75 0.418794
Target:  5'- -cGGcCGCACCGGCCGGcCGAcuggaccGUcCACCa -3'
miRNA:   3'- uuCCuGCGUGGCCGGCU-GCU-------UA-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 16193 0.75 0.419665
Target:  5'- gGGGGACGCACgGGCCGcccucCGcAcgCGCCg -3'
miRNA:   3'- -UUCCUGCGUGgCCGGCu----GC-UuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 79872 0.75 0.428435
Target:  5'- -uGGACGCGgCGGCCGAgcUGuacGUCGCCc -3'
miRNA:   3'- uuCCUGCGUgGCCGGCU--GCu--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 93369 0.74 0.49267
Target:  5'- -uGGACGaCGCCgGGCCGGCGGAcC-CCa -3'
miRNA:   3'- uuCCUGC-GUGG-CCGGCUGCUUaGuGG- -5'
5234 3' -56.6 NC_001798.1 + 36485 0.74 0.49267
Target:  5'- gGAGGGgGCGCCGGCgCGACGcgggCgGCCg -3'
miRNA:   3'- -UUCCUgCGUGGCCG-GCUGCuua-G-UGG- -5'
5234 3' -56.6 NC_001798.1 + 78381 0.73 0.502213
Target:  5'- cGAGGACGCGCUGGUCG-CGug-CGCg -3'
miRNA:   3'- -UUCCUGCGUGGCCGGCuGCuuaGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.