miRNA display CGI


Results 21 - 40 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 78381 0.73 0.502213
Target:  5'- cGAGGACGCGCUGGUCG-CGug-CGCg -3'
miRNA:   3'- -UUCCUGCGUGGCCGGCuGCuuaGUGg -5'
5234 3' -56.6 NC_001798.1 + 28990 0.73 0.521535
Target:  5'- aGGGGGCgGCGCCGGCCaACcGcgCGCCg -3'
miRNA:   3'- -UUCCUG-CGUGGCCGGcUGcUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 116199 0.73 0.531305
Target:  5'- -uGGGCGgGCaggcucaGGCCGAgcUGAAUCACCu -3'
miRNA:   3'- uuCCUGCgUGg------CCGGCU--GCUUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 25086 0.73 0.541139
Target:  5'- cAGGGCGcCGCCGGgCGGCGccccgCGCCc -3'
miRNA:   3'- uUCCUGC-GUGGCCgGCUGCuua--GUGG- -5'
5234 3' -56.6 NC_001798.1 + 36623 0.73 0.541139
Target:  5'- cGGGGGCGCGCggCGGCCgGGCGGGggcgCGCUu -3'
miRNA:   3'- -UUCCUGCGUG--GCCGG-CUGCUUa---GUGG- -5'
5234 3' -56.6 NC_001798.1 + 31344 0.73 0.541139
Target:  5'- gGGGGGCGCGCgcaGGCgCGGCGggUgggcgaagaCGCCg -3'
miRNA:   3'- -UUCCUGCGUGg--CCG-GCUGCuuA---------GUGG- -5'
5234 3' -56.6 NC_001798.1 + 73961 0.73 0.541139
Target:  5'- -uGGACGCGCgCGGCCG-CGGGcUCcggGCCg -3'
miRNA:   3'- uuCCUGCGUG-GCCGGCuGCUU-AG---UGG- -5'
5234 3' -56.6 NC_001798.1 + 86276 0.73 0.541139
Target:  5'- -cGGGCGCACCGGCgGG-GAAU-GCCu -3'
miRNA:   3'- uuCCUGCGUGGCCGgCUgCUUAgUGG- -5'
5234 3' -56.6 NC_001798.1 + 37088 0.73 0.541139
Target:  5'- cAGGGACGuCGCCGGuuGGgcuUGuuUCACCg -3'
miRNA:   3'- -UUCCUGC-GUGGCCggCU---GCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 28070 0.72 0.551034
Target:  5'- cGAGaGCGCGCCGGCCG-CGuccUCGCUc -3'
miRNA:   3'- -UUCcUGCGUGGCCGGCuGCuu-AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 28860 0.72 0.560984
Target:  5'- cGAGGGCgGCcUCGGCCGGCGGA--GCCc -3'
miRNA:   3'- -UUCCUG-CGuGGCCGGCUGCUUagUGG- -5'
5234 3' -56.6 NC_001798.1 + 55168 0.72 0.570982
Target:  5'- -cGGAccaaCGCGCUGGCCaacgacggcccGACGAacGUCGCCg -3'
miRNA:   3'- uuCCU----GCGUGGCCGG-----------CUGCU--UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 39618 0.72 0.570982
Target:  5'- uGGaGACGCGCCGGCgggguuuuggUGugGAGUCggcGCCg -3'
miRNA:   3'- uUC-CUGCGUGGCCG----------GCugCUUAG---UGG- -5'
5234 3' -56.6 NC_001798.1 + 77614 0.72 0.579011
Target:  5'- cAAGGucaucggcgccacGCGaCGCCGcGCCGACGAacuugaggccgccGUCGCCg -3'
miRNA:   3'- -UUCC-------------UGC-GUGGC-CGGCUGCU-------------UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 111315 0.72 0.581022
Target:  5'- -uGGAUGUACCGaCCGACGAGcCGCa -3'
miRNA:   3'- uuCCUGCGUGGCcGGCUGCUUaGUGg -5'
5234 3' -56.6 NC_001798.1 + 36518 0.72 0.591099
Target:  5'- cGGGGGCGCGCggCGGCCGgGCGGGggcgCGCg -3'
miRNA:   3'- -UUCCUGCGUG--GCCGGC-UGCUUa---GUGg -5'
5234 3' -56.6 NC_001798.1 + 36560 0.72 0.591099
Target:  5'- cGGGGGCGCGCggCGGCCGgGCGGGggcgCGCg -3'
miRNA:   3'- -UUCCUGCGUG--GCCGGC-UGCUUa---GUGg -5'
5234 3' -56.6 NC_001798.1 + 62089 0.72 0.600193
Target:  5'- -uGGACaucaGCACCGGCuacauucCGACGAuUCACUg -3'
miRNA:   3'- uuCCUG----CGUGGCCG-------GCUGCUuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 72921 0.72 0.601205
Target:  5'- gGAGcGCGCGCUGGUCGugGcgcgcuUCGCCa -3'
miRNA:   3'- -UUCcUGCGUGGCCGGCugCuu----AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 69507 0.71 0.611334
Target:  5'- cAGGACGCGCCggagcggggcguGGCCcGCGAGcUCGCg -3'
miRNA:   3'- uUCCUGCGUGG------------CCGGcUGCUU-AGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.