miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 154099 0.66 0.889763
Target:  5'- cGGGGCGCgGCCGGCgccggggaccccggCGGCGGGg-ACCc -3'
miRNA:   3'- uUCCUGCG-UGGCCG--------------GCUGCUUagUGG- -5'
5234 3' -56.6 NC_001798.1 + 153968 0.68 0.814961
Target:  5'- cGAGGACGCgGCCGGCgCGcucucgaccGCGGuUC-CCg -3'
miRNA:   3'- -UUCCUGCG-UGGCCG-GC---------UGCUuAGuGG- -5'
5234 3' -56.6 NC_001798.1 + 153771 0.69 0.741515
Target:  5'- aGGGGGCGCugCGGCCcGCGcuccuugCGCg -3'
miRNA:   3'- -UUCCUGCGugGCCGGcUGCuua----GUGg -5'
5234 3' -56.6 NC_001798.1 + 153684 0.68 0.788412
Target:  5'- cGGGGACGCggggGCCGccGCCGGCGcaggcucagGcgCGCCa -3'
miRNA:   3'- -UUCCUGCG----UGGC--CGGCUGC---------UuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 153175 0.7 0.672161
Target:  5'- cGGGGCucCGCCGGCCGAgGccgcccUCGCCg -3'
miRNA:   3'- uUCCUGc-GUGGCCGGCUgCuu----AGUGG- -5'
5234 3' -56.6 NC_001798.1 + 153041 0.67 0.831856
Target:  5'- cGGcGGCGCGCgguUGGCCGGCGc--CGCCc -3'
miRNA:   3'- uUC-CUGCGUG---GCCGGCUGCuuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 152050 0.66 0.878038
Target:  5'- gGGGGGCgGCGCaCGGCCcACGGggGUCcCCc -3'
miRNA:   3'- -UUCCUG-CGUG-GCCGGcUGCU--UAGuGG- -5'
5234 3' -56.6 NC_001798.1 + 151218 0.66 0.904596
Target:  5'- cAGGGA-GCGCgGgGCCGuccGCGggUUGCCc -3'
miRNA:   3'- -UUCCUgCGUGgC-CGGC---UGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 150845 0.69 0.759674
Target:  5'- aGGGGGCGCcggucgggucgcgGCgGGCUGggagguuccGCGggUCGCCc -3'
miRNA:   3'- -UUCCUGCG-------------UGgCCGGC---------UGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 150448 0.71 0.621478
Target:  5'- -cGGACGCGCgGGgCGACGGccgCGCg -3'
miRNA:   3'- uuCCUGCGUGgCCgGCUGCUua-GUGg -5'
5234 3' -56.6 NC_001798.1 + 150346 0.68 0.778354
Target:  5'- cGGGGCGCgcggugcgcguccACCGGCaCGGCGGGcggCGCg -3'
miRNA:   3'- uUCCUGCG-------------UGGCCG-GCUGCUUa--GUGg -5'
5234 3' -56.6 NC_001798.1 + 149979 0.67 0.855842
Target:  5'- cGGGGGCGCGgCGcCCG-CGGA-CGCCg -3'
miRNA:   3'- -UUCCUGCGUgGCcGGCuGCUUaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 149934 0.68 0.800971
Target:  5'- gGAGGAgGCGgCGGCgaccgcggccugggaCGACGGAgaCGCCg -3'
miRNA:   3'- -UUCCUgCGUgGCCG---------------GCUGCUUa-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 149293 0.71 0.621478
Target:  5'- cGGGugGCGCgaccggaGGCCGugGAAguccagcgCGCCc -3'
miRNA:   3'- uUCCugCGUGg------CCGGCugCUUa-------GUGG- -5'
5234 3' -56.6 NC_001798.1 + 149247 0.81 0.177974
Target:  5'- cGGGGGCGuCGCCGGCCGGCGcgggcgCGCCc -3'
miRNA:   3'- -UUCCUGC-GUGGCCGGCUGCuua---GUGG- -5'
5234 3' -56.6 NC_001798.1 + 147044 0.69 0.751119
Target:  5'- cGAGGuGCGCcCCGGCCGGaGGGgcccccgCACCu -3'
miRNA:   3'- -UUCC-UGCGuGGCCGGCUgCUUa------GUGG- -5'
5234 3' -56.6 NC_001798.1 + 146499 0.68 0.823494
Target:  5'- -cGGGCcggcaacgccccGCGCCGGCCGcgGCGGAgagaACCc -3'
miRNA:   3'- uuCCUG------------CGUGGCCGGC--UGCUUag--UGG- -5'
5234 3' -56.6 NC_001798.1 + 143297 0.7 0.672161
Target:  5'- uAGGGGC-CGuCCGcccCCGGCGggUCGCCg -3'
miRNA:   3'- -UUCCUGcGU-GGCc--GGCUGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 142171 0.68 0.788412
Target:  5'- cAGGGACGCGCgCGGUucUGACGcggggucgaGcgCGCCa -3'
miRNA:   3'- -UUCCUGCGUG-GCCG--GCUGC---------UuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 141589 0.67 0.863448
Target:  5'- -cGGcACGCGaCGGCCGGCG--UgGCCg -3'
miRNA:   3'- uuCC-UGCGUgGCCGGCUGCuuAgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.