miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 5' -49.8 NC_001798.1 + 67775 1.12 0.008136
Target:  5'- gCCAACAAUCUGUCGACAGGACAGCACc -3'
miRNA:   3'- -GGUUGUUAGACAGCUGUCCUGUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 116827 0.75 0.788152
Target:  5'- gCCAACAugcgcAUCU-UCGACGGGGCGcuGCACg -3'
miRNA:   3'- -GGUUGU-----UAGAcAGCUGUCCUGU--CGUG- -5'
5234 5' -49.8 NC_001798.1 + 31779 0.74 0.842243
Target:  5'- aCCGACGcgCgcggGUCGGgAGGGCcgGGCGCg -3'
miRNA:   3'- -GGUUGUuaGa---CAGCUgUCCUG--UCGUG- -5'
5234 5' -49.8 NC_001798.1 + 105356 0.72 0.915219
Target:  5'- uCCGGCGcUCgaUGUCGACGGG-CAGCuCg -3'
miRNA:   3'- -GGUUGUuAG--ACAGCUGUCCuGUCGuG- -5'
5234 5' -49.8 NC_001798.1 + 40207 0.71 0.937405
Target:  5'- aCCGACGcgCaaccgggGUCGGCAcacGGCAGCACa -3'
miRNA:   3'- -GGUUGUuaGa------CAGCUGUc--CUGUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 123215 0.71 0.937405
Target:  5'- uCCggU--UCUGUCG-CGGGGCGGCuACg -3'
miRNA:   3'- -GGuuGuuAGACAGCuGUCCUGUCG-UG- -5'
5234 5' -49.8 NC_001798.1 + 100174 0.7 0.959371
Target:  5'- uCCGccACcGUCgGcCGGCGGGugAGCGCg -3'
miRNA:   3'- -GGU--UGuUAGaCaGCUGUCCugUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 14173 0.7 0.963024
Target:  5'- -gGGCAAaUUGgcccgCGugGGGGCAGCACc -3'
miRNA:   3'- ggUUGUUaGACa----GCugUCCUGUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 29424 0.69 0.972597
Target:  5'- -gGACucccAUCUgcGUCGGCggGGGGCGGCGCa -3'
miRNA:   3'- ggUUGu---UAGA--CAGCUG--UCCUGUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 2521 0.69 0.977892
Target:  5'- gCGGCGG-CggcGUCGGCGGGGCggggGGCGCg -3'
miRNA:   3'- gGUUGUUaGa--CAGCUGUCCUG----UCGUG- -5'
5234 5' -49.8 NC_001798.1 + 124311 0.69 0.980236
Target:  5'- aCCuGCAcgagGUC-GUCGugggcCGGGACGGCGCg -3'
miRNA:   3'- -GGuUGU----UAGaCAGCu----GUCCUGUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 104931 0.69 0.980236
Target:  5'- gCCGcACGA-CUGcagaGACAGGAcCAGCGCg -3'
miRNA:   3'- -GGU-UGUUaGACag--CUGUCCU-GUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 48944 0.69 0.982391
Target:  5'- gUCGACGAUCUGUUugcgGACGcGGACGGgGu -3'
miRNA:   3'- -GGUUGUUAGACAG----CUGU-CCUGUCgUg -5'
5234 5' -49.8 NC_001798.1 + 20870 0.68 0.986163
Target:  5'- uCCGACGAgCUGgggagGACGGGGCGucuGCGCu -3'
miRNA:   3'- -GGUUGUUaGACag---CUGUCCUGU---CGUG- -5'
5234 5' -49.8 NC_001798.1 + 153057 0.68 0.987485
Target:  5'- gCCGGCGccgccccCUGgggcgggcggagCGGCGGGGCGGCGCc -3'
miRNA:   3'- -GGUUGUua-----GACa-----------GCUGUCCUGUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 80 0.68 0.9878
Target:  5'- gCGGCGggCgggCGGCAGGGCAGCcccGCg -3'
miRNA:   3'- gGUUGUuaGacaGCUGUCCUGUCG---UG- -5'
5234 5' -49.8 NC_001798.1 + 154418 0.68 0.9878
Target:  5'- gCGGCGggCgggCGGCAGGGCAGCcccGCg -3'
miRNA:   3'- gGUUGUuaGacaGCUGUCCUGUCG---UG- -5'
5234 5' -49.8 NC_001798.1 + 138559 0.68 0.990494
Target:  5'- aCCAgGCGGUCgccgGUCcACAGGggggggcACAGCACc -3'
miRNA:   3'- -GGU-UGUUAGa---CAGcUGUCC-------UGUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 67144 0.68 0.990622
Target:  5'- cCUGGC-AUCg--CGACGGGcGCAGCACu -3'
miRNA:   3'- -GGUUGuUAGacaGCUGUCC-UGUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 13434 0.68 0.990622
Target:  5'- -gAGCAcgCUG-CGGCAGGcacguucCAGCACu -3'
miRNA:   3'- ggUUGUuaGACaGCUGUCCu------GUCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.