miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 5' -49.8 NC_001798.1 + 80 0.68 0.9878
Target:  5'- gCGGCGggCgggCGGCAGGGCAGCcccGCg -3'
miRNA:   3'- gGUUGUuaGacaGCUGUCCUGUCG---UG- -5'
5234 5' -49.8 NC_001798.1 + 1765 0.66 0.997228
Target:  5'- aCGGCGcaCUGcaCGGCGGG-CAGCACc -3'
miRNA:   3'- gGUUGUuaGACa-GCUGUCCuGUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 2301 0.66 0.99672
Target:  5'- gCCAGCGcgCgcggGUCGAacaugAGGGCcgGGCGCc -3'
miRNA:   3'- -GGUUGUuaGa---CAGCUg----UCCUG--UCGUG- -5'
5234 5' -49.8 NC_001798.1 + 2521 0.69 0.977892
Target:  5'- gCGGCGG-CggcGUCGGCGGGGCggggGGCGCg -3'
miRNA:   3'- gGUUGUUaGa--CAGCUGUCCUG----UCGUG- -5'
5234 5' -49.8 NC_001798.1 + 13434 0.68 0.990622
Target:  5'- -gAGCAcgCUG-CGGCAGGcacguucCAGCACu -3'
miRNA:   3'- ggUUGUuaGACaGCUGUCCu------GUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 14173 0.7 0.963024
Target:  5'- -gGGCAAaUUGgcccgCGugGGGGCAGCACc -3'
miRNA:   3'- ggUUGUUaGACa----GCugUCCUGUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 16075 0.66 0.997668
Target:  5'- gCGGCGggcGUCUGUgggGGCA-GACAGCGCu -3'
miRNA:   3'- gGUUGU---UAGACAg--CUGUcCUGUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 20870 0.68 0.986163
Target:  5'- uCCGACGAgCUGgggagGACGGGGCGucuGCGCu -3'
miRNA:   3'- -GGUUGUUaGACag---CUGUCCUGU---CGUG- -5'
5234 5' -49.8 NC_001798.1 + 29424 0.69 0.972597
Target:  5'- -gGACucccAUCUgcGUCGGCggGGGGCGGCGCa -3'
miRNA:   3'- ggUUGu---UAGA--CAGCUG--UCCUGUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 31779 0.74 0.842243
Target:  5'- aCCGACGcgCgcggGUCGGgAGGGCcgGGCGCg -3'
miRNA:   3'- -GGUUGUuaGa---CAGCUgUCCUG--UCGUG- -5'
5234 5' -49.8 NC_001798.1 + 40207 0.71 0.937405
Target:  5'- aCCGACGcgCaaccgggGUCGGCAcacGGCAGCACa -3'
miRNA:   3'- -GGUUGUuaGa------CAGCUGUc--CUGUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 43820 0.66 0.997627
Target:  5'- uCCAGCGcgccgGUCUcgcguacGUCGGCGGcGauGCGGCGCu -3'
miRNA:   3'- -GGUUGU-----UAGA-------CAGCUGUC-C--UGUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 46236 0.67 0.994718
Target:  5'- aCCGugGcgCcGUUGGcCGGGACGGuCACg -3'
miRNA:   3'- -GGUugUuaGaCAGCU-GUCCUGUC-GUG- -5'
5234 5' -49.8 NC_001798.1 + 48944 0.69 0.982391
Target:  5'- gUCGACGAUCUGUUugcgGACGcGGACGGgGu -3'
miRNA:   3'- -GGUUGUUAGACAG----CUGU-CCUGUCgUg -5'
5234 5' -49.8 NC_001798.1 + 67144 0.68 0.990622
Target:  5'- cCUGGC-AUCg--CGACGGGcGCAGCACu -3'
miRNA:   3'- -GGUUGuUAGacaGCUGUCC-UGUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 67621 0.67 0.994718
Target:  5'- uCCGGCGAgggcggaUG-CGGCAGGGCGGUugGCc -3'
miRNA:   3'- -GGUUGUUag-----ACaGCUGUCCUGUCG--UG- -5'
5234 5' -49.8 NC_001798.1 + 67775 1.12 0.008136
Target:  5'- gCCAACAAUCUGUCGACAGGACAGCACc -3'
miRNA:   3'- -GGUUGUUAGACAGCUGUCCUGUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 75119 0.67 0.992903
Target:  5'- cCCcGCAGUCcg--GGCAGGGCGGCGg -3'
miRNA:   3'- -GGuUGUUAGacagCUGUCCUGUCGUg -5'
5234 5' -49.8 NC_001798.1 + 90527 0.66 0.99672
Target:  5'- -gGGCAAaagUUGUCGcACAGGuaggcCAGCGCg -3'
miRNA:   3'- ggUUGUUa--GACAGC-UGUCCu----GUCGUG- -5'
5234 5' -49.8 NC_001798.1 + 95673 0.67 0.995473
Target:  5'- uUCGGCGGUUUGgcggCGGCggcgGGGGCGGCcgGCg -3'
miRNA:   3'- -GGUUGUUAGACa---GCUG----UCCUGUCG--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.