Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5234 | 5' | -49.8 | NC_001798.1 | + | 154418 | 0.68 | 0.9878 |
Target: 5'- gCGGCGggCgggCGGCAGGGCAGCcccGCg -3' miRNA: 3'- gGUUGUuaGacaGCUGUCCUGUCG---UG- -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 153057 | 0.68 | 0.987485 |
Target: 5'- gCCGGCGccgccccCUGgggcgggcggagCGGCGGGGCGGCGCc -3' miRNA: 3'- -GGUUGUua-----GACa-----------GCUGUCCUGUCGUG- -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 138559 | 0.68 | 0.990494 |
Target: 5'- aCCAgGCGGUCgccgGUCcACAGGggggggcACAGCACc -3' miRNA: 3'- -GGU-UGUUAGa---CAGcUGUCC-------UGUCGUG- -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 135140 | 0.66 | 0.996137 |
Target: 5'- cCCGGCGgccGUCggGcCGGuCuGGACGGCGCg -3' miRNA: 3'- -GGUUGU---UAGa-CaGCU-GuCCUGUCGUG- -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 134464 | 0.66 | 0.997668 |
Target: 5'- cCCGGCGcgCgGUUGGCGuGGGC-GCGCc -3' miRNA: 3'- -GGUUGUuaGaCAGCUGU-CCUGuCGUG- -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 133429 | 0.67 | 0.993773 |
Target: 5'- aCCGACGGccccuugCUGUCGG-AGGACgcgguuaAGCGCg -3' miRNA: 3'- -GGUUGUUa------GACAGCUgUCCUG-------UCGUG- -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 124545 | 0.66 | 0.996137 |
Target: 5'- uCUGGCuguguuuGUCUGUCGgucgaucucggGgAGGGCGGCACc -3' miRNA: 3'- -GGUUGu------UAGACAGC-----------UgUCCUGUCGUG- -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 124311 | 0.69 | 0.980236 |
Target: 5'- aCCuGCAcgagGUC-GUCGugggcCGGGACGGCGCg -3' miRNA: 3'- -GGuUGU----UAGaCAGCu----GUCCUGUCGUG- -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 123215 | 0.71 | 0.937405 |
Target: 5'- uCCggU--UCUGUCG-CGGGGCGGCuACg -3' miRNA: 3'- -GGuuGuuAGACAGCuGUCCUGUCG-UG- -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 116827 | 0.75 | 0.788152 |
Target: 5'- gCCAACAugcgcAUCU-UCGACGGGGCGcuGCACg -3' miRNA: 3'- -GGUUGU-----UAGAcAGCUGUCCUGU--CGUG- -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 105356 | 0.72 | 0.915219 |
Target: 5'- uCCGGCGcUCgaUGUCGACGGG-CAGCuCg -3' miRNA: 3'- -GGUUGUuAG--ACAGCUGUCCuGUCGuG- -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 104931 | 0.69 | 0.980236 |
Target: 5'- gCCGcACGA-CUGcagaGACAGGAcCAGCGCg -3' miRNA: 3'- -GGU-UGUUaGACag--CUGUCCU-GUCGUG- -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 100174 | 0.7 | 0.959371 |
Target: 5'- uCCGccACcGUCgGcCGGCGGGugAGCGCg -3' miRNA: 3'- -GGU--UGuUAGaCaGCUGUCCugUCGUG- -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 95673 | 0.67 | 0.995473 |
Target: 5'- uUCGGCGGUUUGgcggCGGCggcgGGGGCGGCcgGCg -3' miRNA: 3'- -GGUUGUUAGACa---GCUG----UCCUGUCG--UG- -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 90527 | 0.66 | 0.99672 |
Target: 5'- -gGGCAAaagUUGUCGcACAGGuaggcCAGCGCg -3' miRNA: 3'- ggUUGUUa--GACAGC-UGUCCu----GUCGUG- -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 75119 | 0.67 | 0.992903 |
Target: 5'- cCCcGCAGUCcg--GGCAGGGCGGCGg -3' miRNA: 3'- -GGuUGUUAGacagCUGUCCUGUCGUg -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 67775 | 1.12 | 0.008136 |
Target: 5'- gCCAACAAUCUGUCGACAGGACAGCACc -3' miRNA: 3'- -GGUUGUUAGACAGCUGUCCUGUCGUG- -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 67621 | 0.67 | 0.994718 |
Target: 5'- uCCGGCGAgggcggaUG-CGGCAGGGCGGUugGCc -3' miRNA: 3'- -GGUUGUUag-----ACaGCUGUCCUGUCG--UG- -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 67144 | 0.68 | 0.990622 |
Target: 5'- cCUGGC-AUCg--CGACGGGcGCAGCACu -3' miRNA: 3'- -GGUUGuUAGacaGCUGUCC-UGUCGUG- -5' |
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5234 | 5' | -49.8 | NC_001798.1 | + | 48944 | 0.69 | 0.982391 |
Target: 5'- gUCGACGAUCUGUUugcgGACGcGGACGGgGu -3' miRNA: 3'- -GGUUGUUAGACAG----CUGU-CCUGUCgUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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