miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5237 5' -58.5 NC_001798.1 + 93490 0.67 0.803415
Target:  5'- gCCCGGGUACGaGggGCGCcccacGGcGCCc -3'
miRNA:   3'- -GGGCCCAUGC-CuaCGCGucca-CC-UGG- -5'
5237 5' -58.5 NC_001798.1 + 85995 0.67 0.803415
Target:  5'- gCCGGG-GCGcugGCGCAGGggGGugaGCCg -3'
miRNA:   3'- gGGCCCaUGCcuaCGCGUCCa-CC---UGG- -5'
5237 5' -58.5 NC_001798.1 + 122061 0.67 0.803415
Target:  5'- cCCUGGGcgcgucggacGCGGAggcgGUGCuGGcGGGCCu -3'
miRNA:   3'- -GGGCCCa---------UGCCUa---CGCGuCCaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 143814 0.67 0.803415
Target:  5'- gCCCGGGcgGCGcGcgGC-CAGccguUGGACCa -3'
miRNA:   3'- -GGGCCCa-UGC-CuaCGcGUCc---ACCUGG- -5'
5237 5' -58.5 NC_001798.1 + 6609 0.67 0.803415
Target:  5'- gCCGGGgggACGGGgggacggGC-CGGGgggacgGGGCCc -3'
miRNA:   3'- gGGCCCa--UGCCUa------CGcGUCCa-----CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 21812 0.67 0.803415
Target:  5'- cCUCGGG-GCGGAgccCGCGGGaugacgcGGGCCc -3'
miRNA:   3'- -GGGCCCaUGCCUac-GCGUCCa------CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 36766 0.67 0.801692
Target:  5'- cCCUGGGgcuauaaaaggcGCGGucUGUGCAcGG-GGACCu -3'
miRNA:   3'- -GGGCCCa-----------UGCCu-ACGCGU-CCaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 100982 0.67 0.799965
Target:  5'- cCCCGGGggcguggGCGGGgagggggaggaagGCGCGGaGggGGGCg -3'
miRNA:   3'- -GGGCCCa------UGCCUa------------CGCGUC-Ca-CCUGg -5'
5237 5' -58.5 NC_001798.1 + 88305 0.67 0.794748
Target:  5'- cUCCGGGU-CGGugAUGCGCcGaUGGGCg -3'
miRNA:   3'- -GGGCCCAuGCC--UACGCGuCcACCUGg -5'
5237 5' -58.5 NC_001798.1 + 34813 0.67 0.792121
Target:  5'- cCCCGGGgcccccgcgcuccgcCGGggGCcCGGGccGGACCg -3'
miRNA:   3'- -GGGCCCau-------------GCCuaCGcGUCCa-CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 136000 0.67 0.785944
Target:  5'- uCCCGGGgGCGGGgagucggucgGCGUccccGUGGAUCu -3'
miRNA:   3'- -GGGCCCaUGCCUa---------CGCGuc--CACCUGG- -5'
5237 5' -58.5 NC_001798.1 + 2328 0.67 0.785944
Target:  5'- gCCGGGcgccacggcGCGGGgaagaGCGGGUGGuCCg -3'
miRNA:   3'- gGGCCCa--------UGCCUacg--CGUCCACCuGG- -5'
5237 5' -58.5 NC_001798.1 + 27345 0.67 0.785944
Target:  5'- aCCGuGUGCGGgcGgGCGGGUgcuuGGugCa -3'
miRNA:   3'- gGGCcCAUGCCuaCgCGUCCA----CCugG- -5'
5237 5' -58.5 NC_001798.1 + 110322 0.67 0.785944
Target:  5'- gCCGGGgaggucauguCGG-UGCuGCuGGUGGACa -3'
miRNA:   3'- gGGCCCau--------GCCuACG-CGuCCACCUGg -5'
5237 5' -58.5 NC_001798.1 + 2438 0.67 0.785944
Target:  5'- cCCCGGcGgcUGGcgGCGCcagccgcccugcGGGUcgGGGCCc -3'
miRNA:   3'- -GGGCC-CauGCCuaCGCG------------UCCA--CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 23830 0.67 0.785944
Target:  5'- cCCCGGG-GCGcGUGCuguacgGCGGGcUGGGCg -3'
miRNA:   3'- -GGGCCCaUGCcUACG------CGUCC-ACCUGg -5'
5237 5' -58.5 NC_001798.1 + 52875 0.67 0.777011
Target:  5'- gCUGGGgccGCGGGUcCGCGcGUGGACa -3'
miRNA:   3'- gGGCCCa--UGCCUAcGCGUcCACCUGg -5'
5237 5' -58.5 NC_001798.1 + 36670 0.67 0.774307
Target:  5'- cCUCGGGUucccaagaccuaucACGuGUGCGCAGGggaggggaGGACg -3'
miRNA:   3'- -GGGCCCA--------------UGCcUACGCGUCCa-------CCUGg -5'
5237 5' -58.5 NC_001798.1 + 150367 0.68 0.767957
Target:  5'- aCCGGcacgGCGGGcgGCGCGGGcccGGCCg -3'
miRNA:   3'- gGGCCca--UGCCUa-CGCGUCCac-CUGG- -5'
5237 5' -58.5 NC_001798.1 + 144731 0.68 0.767957
Target:  5'- aCCCGGcccugACGGGUGCGUGGcUGacGGCCu -3'
miRNA:   3'- -GGGCCca---UGCCUACGCGUCcAC--CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.