miRNA display CGI


Results 21 - 40 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5237 5' -58.5 NC_001798.1 + 39419 0.66 0.83656
Target:  5'- aCCGGGgcGCGGccguccgcGUGCGgGGGggucagGGACa -3'
miRNA:   3'- gGGCCCa-UGCC--------UACGCgUCCa-----CCUGg -5'
5237 5' -58.5 NC_001798.1 + 91959 0.66 0.834965
Target:  5'- cCCCGGGcccccccguccgGCGcGAUcCGguGGcGGGCCa -3'
miRNA:   3'- -GGGCCCa-----------UGC-CUAcGCguCCaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 34744 0.66 0.828517
Target:  5'- gCCCGGGaGCGGGgcgGCcCGGGagGGAg- -3'
miRNA:   3'- -GGGCCCaUGCCUa--CGcGUCCa-CCUgg -5'
5237 5' -58.5 NC_001798.1 + 149659 0.67 0.820306
Target:  5'- gCCGGGcgcCGGGU-CGCGGGccccgggcucgGGGCCg -3'
miRNA:   3'- gGGCCCau-GCCUAcGCGUCCa----------CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 51484 0.67 0.820306
Target:  5'- gUCGGGccCGGA-GCuGCAGGcggcauucccccUGGACCg -3'
miRNA:   3'- gGGCCCauGCCUaCG-CGUCC------------ACCUGG- -5'
5237 5' -58.5 NC_001798.1 + 10689 0.67 0.820306
Target:  5'- aCCCacg-ACGG--GCGCAGG-GGACCg -3'
miRNA:   3'- -GGGcccaUGCCuaCGCGUCCaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 31331 0.67 0.819477
Target:  5'- cCCUGcGGccgGCGGGggGCGCgcgcaggcgcggcGGGUGGGCg -3'
miRNA:   3'- -GGGC-CCa--UGCCUa-CGCG-------------UCCACCUGg -5'
5237 5' -58.5 NC_001798.1 + 104503 0.67 0.817812
Target:  5'- gCCGcGUgccaaaaacgcgGCGGcgGCGCGguugacgucgucgcGGUGGGCCa -3'
miRNA:   3'- gGGCcCA------------UGCCuaCGCGU--------------CCACCUGG- -5'
5237 5' -58.5 NC_001798.1 + 6282 0.67 0.811937
Target:  5'- gCCGGGgggACGGGc-CGgGGGgacGGGCCg -3'
miRNA:   3'- gGGCCCa--UGCCUacGCgUCCa--CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 6321 0.67 0.811937
Target:  5'- gCCGGGgggACGGGc-CGgGGGgacGGGCCg -3'
miRNA:   3'- gGGCCCa--UGCCUacGCgUCCa--CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 15406 0.67 0.811937
Target:  5'- aCCCGGGguUGCGGGUcCGggaGGGguuguuugGGGCCc -3'
miRNA:   3'- -GGGCCC--AUGCCUAcGCg--UCCa-------CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 31884 0.67 0.811937
Target:  5'- gCCCGccccCGGAagagGCGCGGGUcGGACUc -3'
miRNA:   3'- -GGGCccauGCCUa---CGCGUCCA-CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 46678 0.67 0.811937
Target:  5'- gCCCGGGgcCGGAUacCGCGGG-GG-Cg -3'
miRNA:   3'- -GGGCCCauGCCUAc-GCGUCCaCCuGg -5'
5237 5' -58.5 NC_001798.1 + 67268 0.67 0.811937
Target:  5'- gUCUGGGUccccACGGAUGUagucGCGGacGGGCCc -3'
miRNA:   3'- -GGGCCCA----UGCCUACG----CGUCcaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 24052 0.67 0.811937
Target:  5'- gCCCGGGgACGug-GCGC---UGGACCa -3'
miRNA:   3'- -GGGCCCaUGCcuaCGCGuccACCUGG- -5'
5237 5' -58.5 NC_001798.1 + 101816 0.67 0.811937
Target:  5'- cCUCGGGUugGGGUaagcucGCGgCGGGgGGAg- -3'
miRNA:   3'- -GGGCCCAugCCUA------CGC-GUCCaCCUgg -5'
5237 5' -58.5 NC_001798.1 + 135491 0.67 0.811937
Target:  5'- cCCCGGGgacGCGGAcgccGCGCAcGGcGcGAUCc -3'
miRNA:   3'- -GGGCCCa--UGCCUa---CGCGU-CCaC-CUGG- -5'
5237 5' -58.5 NC_001798.1 + 10264 0.67 0.810244
Target:  5'- cCUCGGGgauaacacgaGGGUGCGuCGGGgGGGCg -3'
miRNA:   3'- -GGGCCCaug-------CCUACGC-GUCCaCCUGg -5'
5237 5' -58.5 NC_001798.1 + 6609 0.67 0.803415
Target:  5'- gCCGGGgggACGGGgggacggGC-CGGGgggacgGGGCCc -3'
miRNA:   3'- gGGCCCa--UGCCUa------CGcGUCCa-----CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 143814 0.67 0.803415
Target:  5'- gCCCGGGcgGCGcGcgGC-CAGccguUGGACCa -3'
miRNA:   3'- -GGGCCCa-UGC-CuaCGcGUCc---ACCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.