miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5237 5' -58.5 NC_001798.1 + 12700 0.71 0.574008
Target:  5'- gCCCGGGUugcugggggcgGCGGggGCGU-GGUGcGGCg -3'
miRNA:   3'- -GGGCCCA-----------UGCCuaCGCGuCCAC-CUGg -5'
5237 5' -58.5 NC_001798.1 + 101856 0.71 0.583797
Target:  5'- uCCCGGcGgcgGCGGAggggggugggcgUGUGCGGGggaGGGCUg -3'
miRNA:   3'- -GGGCC-Ca--UGCCU------------ACGCGUCCa--CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 4835 0.71 0.587723
Target:  5'- aCCCGGGccgcGCGGcgGgGCgacgguccggguucgGGGUGGGCg -3'
miRNA:   3'- -GGGCCCa---UGCCuaCgCG---------------UCCACCUGg -5'
5237 5' -58.5 NC_001798.1 + 153069 0.71 0.59362
Target:  5'- cCCUGGGgcggGCGGA-GCgGCGGGgcggcgccGGGCCc -3'
miRNA:   3'- -GGGCCCa---UGCCUaCG-CGUCCa-------CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 18219 0.71 0.59362
Target:  5'- gCCGGGggACGGuggGCGggaaGGGUGGAUg -3'
miRNA:   3'- gGGCCCa-UGCCua-CGCg---UCCACCUGg -5'
5237 5' -58.5 NC_001798.1 + 57540 0.71 0.59362
Target:  5'- uUCGGGggGCGGAUGCGUuccgcGG-GGACg -3'
miRNA:   3'- gGGCCCa-UGCCUACGCGu----CCaCCUGg -5'
5237 5' -58.5 NC_001798.1 + 31148 0.7 0.603468
Target:  5'- gCgCGGGgGCGGcgGUGCGGGgGcGACCc -3'
miRNA:   3'- -GgGCCCaUGCCuaCGCGUCCaC-CUGG- -5'
5237 5' -58.5 NC_001798.1 + 43021 0.7 0.603468
Target:  5'- gCCCGGGg--GGA-GCGCGGGgccccGGGCg -3'
miRNA:   3'- -GGGCCCaugCCUaCGCGUCCa----CCUGg -5'
5237 5' -58.5 NC_001798.1 + 67620 0.7 0.603468
Target:  5'- cUCCGGcGaggGCGGAUGCgGCAGGgcgguuGGCCa -3'
miRNA:   3'- -GGGCC-Ca--UGCCUACG-CGUCCac----CUGG- -5'
5237 5' -58.5 NC_001798.1 + 94329 0.7 0.613337
Target:  5'- aCCGGuGcUGCGGcgGCGCGucaUGGACCu -3'
miRNA:   3'- gGGCC-C-AUGCCuaCGCGUcc-ACCUGG- -5'
5237 5' -58.5 NC_001798.1 + 150210 0.7 0.623218
Target:  5'- aCCGGGggUGuuGGUGcCGCGGG-GGACCc -3'
miRNA:   3'- gGGCCCauGC--CUAC-GCGUCCaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 56172 0.7 0.623218
Target:  5'- gCCCGGGggacgGCGGggGgGUGGGguggGGugUg -3'
miRNA:   3'- -GGGCCCa----UGCCuaCgCGUCCa---CCugG- -5'
5237 5' -58.5 NC_001798.1 + 29901 0.7 0.623218
Target:  5'- -gCGGGUugGGGgugGuCGCGggcGGUGGGCUc -3'
miRNA:   3'- ggGCCCAugCCUa--C-GCGU---CCACCUGG- -5'
5237 5' -58.5 NC_001798.1 + 79191 0.7 0.642993
Target:  5'- gCCCGGcUGCGGGaugagguggUGCGCAGG-GuGCCc -3'
miRNA:   3'- -GGGCCcAUGCCU---------ACGCGUCCaCcUGG- -5'
5237 5' -58.5 NC_001798.1 + 97472 0.7 0.642993
Target:  5'- gCUGGGggcCGGcgGCGCgaccGGGgGGGCCg -3'
miRNA:   3'- gGGCCCau-GCCuaCGCG----UCCaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 106982 0.7 0.642993
Target:  5'- gCCGGGga-GGcgGCGguGGUaauGACCa -3'
miRNA:   3'- gGGCCCaugCCuaCGCguCCAc--CUGG- -5'
5237 5' -58.5 NC_001798.1 + 27178 0.7 0.652873
Target:  5'- gCUCGGGgccGCGGgcGCGgGGGgagGGGCg -3'
miRNA:   3'- -GGGCCCa--UGCCuaCGCgUCCa--CCUGg -5'
5237 5' -58.5 NC_001798.1 + 135246 0.7 0.65682
Target:  5'- gCCCGGGggcggGCgggccuggaaaggcuGGAcGCGCuGGUGGcgGCCg -3'
miRNA:   3'- -GGGCCCa----UG---------------CCUaCGCGuCCACC--UGG- -5'
5237 5' -58.5 NC_001798.1 + 54731 0.69 0.662736
Target:  5'- aCCUGGGggcCGGAcGCGgAGGccgaaccGGACCa -3'
miRNA:   3'- -GGGCCCau-GCCUaCGCgUCCa------CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 117562 0.69 0.662736
Target:  5'- gCCCaGGUGCcGcgGCGCGccGGcaUGGACCa -3'
miRNA:   3'- -GGGcCCAUGcCuaCGCGU--CC--ACCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.