miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5237 5' -58.5 NC_001798.1 + 14302 0.67 0.803415
Target:  5'- cCCCGGa-ACGGAUGaGUGGGgGGugCg -3'
miRNA:   3'- -GGGCCcaUGCCUACgCGUCCaCCugG- -5'
5237 5' -58.5 NC_001798.1 + 15278 0.71 0.574008
Target:  5'- cCCCGGGUucCGGGcgugGCGguGGUcgcgGcGACCg -3'
miRNA:   3'- -GGGCCCAu-GCCUa---CGCguCCA----C-CUGG- -5'
5237 5' -58.5 NC_001798.1 + 15406 0.67 0.811937
Target:  5'- aCCCGGGguUGCGGGUcCGggaGGGguuguuugGGGCCc -3'
miRNA:   3'- -GGGCCC--AUGCCUAcGCg--UCCa-------CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 16483 0.69 0.672577
Target:  5'- -aUGGGcugACGGcagGCGCGGGUGaGCCg -3'
miRNA:   3'- ggGCCCa--UGCCua-CGCGUCCACcUGG- -5'
5237 5' -58.5 NC_001798.1 + 18219 0.71 0.59362
Target:  5'- gCCGGGggACGGuggGCGggaaGGGUGGAUg -3'
miRNA:   3'- gGGCCCa-UGCCua-CGCg---UCCACCUGg -5'
5237 5' -58.5 NC_001798.1 + 21494 0.66 0.842087
Target:  5'- cCCCGGGUcACcguaccugcgauaaGGcUGCaGUGGGUGGAUg -3'
miRNA:   3'- -GGGCCCA-UG--------------CCuACG-CGUCCACCUGg -5'
5237 5' -58.5 NC_001798.1 + 21812 0.67 0.803415
Target:  5'- cCUCGGG-GCGGAgccCGCGGGaugacgcGGGCCc -3'
miRNA:   3'- -GGGCCCaUGCCUac-GCGUCCa------CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 22330 0.68 0.75879
Target:  5'- gCCaCGGacGCGGAcGCGCGGGcgucggggcgGGGCCg -3'
miRNA:   3'- -GG-GCCcaUGCCUaCGCGUCCa---------CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 22884 0.86 0.073126
Target:  5'- gCCCGGGUuCGGGUG-GCAcGGUGGGCCg -3'
miRNA:   3'- -GGGCCCAuGCCUACgCGU-CCACCUGG- -5'
5237 5' -58.5 NC_001798.1 + 23830 0.67 0.785944
Target:  5'- cCCCGGG-GCGcGUGCuguacgGCGGGcUGGGCg -3'
miRNA:   3'- -GGGCCCaUGCcUACG------CGUCC-ACCUGg -5'
5237 5' -58.5 NC_001798.1 + 24052 0.67 0.811937
Target:  5'- gCCCGGGgACGug-GCGC---UGGACCa -3'
miRNA:   3'- -GGGCCCaUGCcuaCGCGuccACCUGG- -5'
5237 5' -58.5 NC_001798.1 + 25493 0.66 0.862571
Target:  5'- cCUCGGGcccgcUGCgccgcgcggcggccuGGAUGCGcCAGGUGcccGACCc -3'
miRNA:   3'- -GGGCCC-----AUG---------------CCUACGC-GUCCAC---CUGG- -5'
5237 5' -58.5 NC_001798.1 + 25673 0.68 0.753239
Target:  5'- cCCUGGGcaaccggcucUGCGGGcccgccacggccgccUGgGCGGGcaacUGGACCg -3'
miRNA:   3'- -GGGCCC----------AUGCCU---------------ACgCGUCC----ACCUGG- -5'
5237 5' -58.5 NC_001798.1 + 26520 0.68 0.730695
Target:  5'- gCCGcGGcggGCGGcgGCGUggAGGUgguggGGACCg -3'
miRNA:   3'- gGGC-CCa--UGCCuaCGCG--UCCA-----CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 27178 0.7 0.652873
Target:  5'- gCUCGGGgccGCGGgcGCGgGGGgagGGGCg -3'
miRNA:   3'- -GGGCCCa--UGCCuaCGCgUCCa--CCUGg -5'
5237 5' -58.5 NC_001798.1 + 27217 0.77 0.26454
Target:  5'- cCCCGGG-GCGGG-GCGCGGGggagGcGGCCg -3'
miRNA:   3'- -GGGCCCaUGCCUaCGCGUCCa---C-CUGG- -5'
5237 5' -58.5 NC_001798.1 + 27345 0.67 0.785944
Target:  5'- aCCGuGUGCGGgcGgGCGGGUgcuuGGugCa -3'
miRNA:   3'- gGGCcCAUGCCuaCgCGUCCA----CCugG- -5'
5237 5' -58.5 NC_001798.1 + 28569 0.66 0.83656
Target:  5'- gCCGcGcGUGCaGGUGCGCcaucuGGUGG-CCu -3'
miRNA:   3'- gGGC-C-CAUGcCUACGCGu----CCACCuGG- -5'
5237 5' -58.5 NC_001798.1 + 29901 0.7 0.623218
Target:  5'- -gCGGGUugGGGgugGuCGCGggcGGUGGGCUc -3'
miRNA:   3'- ggGCCCAugCCUa--C-GCGU---CCACCUGG- -5'
5237 5' -58.5 NC_001798.1 + 30162 0.66 0.83656
Target:  5'- gCCgGGGUgagggagggacACGGGggacacgGCGCGGG-GGuCCc -3'
miRNA:   3'- -GGgCCCA-----------UGCCUa------CGCGUCCaCCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.