miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5237 5' -58.5 NC_001798.1 + 34 0.66 0.85212
Target:  5'- cCCCGGGggggguguuuuUugGGGggggGCGCgaAGGcGGGCg -3'
miRNA:   3'- -GGGCCC-----------AugCCUa---CGCG--UCCaCCUGg -5'
5237 5' -58.5 NC_001798.1 + 2264 0.72 0.506864
Target:  5'- gCCGGGggGCGGGgcgGCGCAGcGcGcGGCCa -3'
miRNA:   3'- gGGCCCa-UGCCUa--CGCGUC-CaC-CUGG- -5'
5237 5' -58.5 NC_001798.1 + 2328 0.67 0.785944
Target:  5'- gCCGGGcgccacggcGCGGGgaagaGCGGGUGGuCCg -3'
miRNA:   3'- gGGCCCa--------UGCCUacg--CGUCCACCuGG- -5'
5237 5' -58.5 NC_001798.1 + 2438 0.67 0.785944
Target:  5'- cCCCGGcGgcUGGcgGCGCcagccgcccugcGGGUcgGGGCCc -3'
miRNA:   3'- -GGGCC-CauGCCuaCGCG------------UCCA--CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 3004 0.81 0.152596
Target:  5'- cCCCGGGcGCGGggGCGC-GGcGGGCCg -3'
miRNA:   3'- -GGGCCCaUGCCuaCGCGuCCaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 3666 0.66 0.84443
Target:  5'- cCCCGGGcGCcac-GCGCGGGUucuGGAgCCa -3'
miRNA:   3'- -GGGCCCaUGccuaCGCGUCCA---CCU-GG- -5'
5237 5' -58.5 NC_001798.1 + 3889 0.69 0.682387
Target:  5'- cCCCGGGgGCGGG-GgGCcGGccccGGGCCa -3'
miRNA:   3'- -GGGCCCaUGCCUaCgCGuCCa---CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 4835 0.71 0.587723
Target:  5'- aCCCGGGccgcGCGGcgGgGCgacgguccggguucgGGGUGGGCg -3'
miRNA:   3'- -GGGCCCa---UGCCuaCgCG---------------UCCACCUGg -5'
5237 5' -58.5 NC_001798.1 + 6237 0.69 0.672577
Target:  5'- gCCGGGgggacggGCGGggGaCGgGGGgacGGGCCg -3'
miRNA:   3'- gGGCCCa------UGCCuaC-GCgUCCa--CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 6282 0.67 0.811937
Target:  5'- gCCGGGgggACGGGc-CGgGGGgacGGGCCg -3'
miRNA:   3'- gGGCCCa--UGCCUacGCgUCCa--CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 6321 0.67 0.811937
Target:  5'- gCCGGGgggACGGGc-CGgGGGgacGGGCCg -3'
miRNA:   3'- gGGCCCa--UGCCUacGCgUCCa--CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 6360 0.68 0.730695
Target:  5'- gCCGGGgggACGGGccgggggGC-CGGG-GGGCCg -3'
miRNA:   3'- gGGCCCa--UGCCUa------CGcGUCCaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 6546 0.66 0.859623
Target:  5'- gCCGGGgggACGGGgggacggGC-CGGGgGGACg -3'
miRNA:   3'- gGGCCCa--UGCCUa------CGcGUCCaCCUGg -5'
5237 5' -58.5 NC_001798.1 + 6609 0.67 0.803415
Target:  5'- gCCGGGgggACGGGgggacggGC-CGGGgggacgGGGCCc -3'
miRNA:   3'- gGGCCCa--UGCCUa------CGcGUCCa-----CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 9659 0.66 0.84443
Target:  5'- -gCGGGccgcgcGCGGAggGCGCGGGaugggGGGCUc -3'
miRNA:   3'- ggGCCCa-----UGCCUa-CGCGUCCa----CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 10264 0.67 0.810244
Target:  5'- cCUCGGGgauaacacgaGGGUGCGuCGGGgGGGCg -3'
miRNA:   3'- -GGGCCCaug-------CCUACGC-GUCCaCCUGg -5'
5237 5' -58.5 NC_001798.1 + 10689 0.67 0.820306
Target:  5'- aCCCacg-ACGG--GCGCAGG-GGACCg -3'
miRNA:   3'- -GGGcccaUGCCuaCGCGUCCaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 11656 0.66 0.85212
Target:  5'- cCCCGGGgGCGGggGU-CGGGUcucggggggaGGACg -3'
miRNA:   3'- -GGGCCCaUGCCuaCGcGUCCA----------CCUGg -5'
5237 5' -58.5 NC_001798.1 + 12700 0.71 0.574008
Target:  5'- gCCCGGGUugcugggggcgGCGGggGCGU-GGUGcGGCg -3'
miRNA:   3'- -GGGCCCA-----------UGCCuaCGCGuCCAC-CUGg -5'
5237 5' -58.5 NC_001798.1 + 13045 0.76 0.338319
Target:  5'- gCCGGGg--GGAUGCGCAGGgGGAg- -3'
miRNA:   3'- gGGCCCaugCCUACGCGUCCaCCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.